Arvicanthis niloticus (African grass rat): 117693537
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Entry
117693537 CDS
T08817
Name
(RefSeq) collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04151
PI3K-Akt signaling pathway
anu04510
Focal adhesion
anu04512
ECM-receptor interaction
anu04518
Integrin signaling
anu04820
Cytoskeleton in muscle cells
anu04974
Protein digestion and absorption
anu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117693537
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117693537
04518 Integrin signaling
117693537
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117693537
09142 Cell motility
04820 Cytoskeleton in muscle cells
117693537
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117693537
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
117693537
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117693537
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117693537
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117693537
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117693537
Hyaluronan
Extracellular matrix or blood plasma proteins
117693537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
117693537
NCBI-ProteinID:
XP_034340151
LinkDB
All DBs
Position
21:complement(26188145..26280781)
Genome browser
AA seq
2115 aa
AA seq
DB search
MDTRKRVCLIIFLAAGLGFVKSQRIVCREASVGDIVLLVHSSINPQHAHSVRNFLSILAN
SFQVGRENIRVSLALYGDRPTSEFLLSAYPGKGDVLKHIRGLQFKPGGNRMGQALQFILE
HHFQEGAGSRASQGVPQVAVVMSSGLAEDHIREPAEALRRAGILLYAIGVKDASRAELRE
IASSPKDNFTFFVPNFSGLPGLAQKLRSQLCSTLATTAAQYTEPESPESTETYADVVFLI
DTSQGTSQASFQWMQNFISRIIGILEVGKDKYRIGLAQYSDQGHTEFLFNTHKTGNEMVT
HIREHLVLRGGSRRTGQGLRFLHRTFFQEAAGSRFLQGVPQYVVVITSGKSEDEVQEAAQ
TLRTRGVGIMSVGLQDFDRRELEGTGPVVLVSDLKGEDGVRQLIQDVTMLIQGSPQPPQV
MIEVAKEAAEACLASIPADLVFLIEDFSSVGQANFQQVVHFLKTTVNSFNIHPYATRVSL
VFYSEKPRLEFYLDTFQNAAQVLRHLDRLTFQARRGRTKAGAALDFLRKEVFLPEKGSRP
SQGIQQIAVVIMESPSLDSVSTPASQLRRAGVTVYAAGIQPASESRDLEKIVTYPPWKHA
VRLESFLQLSVMGNKLKKKLCSETLSLGLPGVSYSLESTLQSTPQSCMSVEKADIYFLID
GSGSIKPDDFTEMKDFMKKAIKMFHIGPDRVRFGVVQYSDKIISRFLLTEYASMAELRTA
IDNIQQGGGGTTTGQALSEMALVFENTARINVARYLIVITDGQSTDPVAEAAQGLRDIGV
NIYAIGVRDANTTELKEIANNQMFFIHEFDSLKDLHQEVIQDICSSENCKSRKADIIFLI
DGSESIDPEDFKKMKNFMERMVNQSNIGADEIQIGLLQFSSTAREEFRLNHYFSKVEMCR
AILNVQQMNTGTLTGEALNFTLPFFDSSRGGRPRVHQYLIVITDGVSHDNVASPAKALRD
RNIIIFAVGVGKARRAQLLEITNDQDKVYHEENFDSLQNLEKEIFYEVCSPQGCDVDLSV
GVDTSASSERAQQELQRLLPGLMQQLTLLSNISCEAPGQMELRFRYVVPGSIRQPVFDSG
FEKYSDETIQKFLVHHSSVNNRMDVDFLQSLGETAIYQSFAKVKVLLVFTDGLDEDLERL
RRTLELLRSRGFSGLLLIGLGGAPKLEELQELEFGRGFVYRQPLSSSLPSLPSVLLKQLD
TIVERTCCNVQAKCYGDDGVRGDPGSLGEEGERGLDGLPGHPGEEGDHGQRGPRGLPGLR
GEQGCPGVRGPKGARGFSGEKGNPGEEGVGGLDGEQGDRGAAGLSGEKGSSGSRGSTGLP
GPTGPRGEPGLRGDPGDPGIDNFIQGPKGEKGRRGHQGSSGFHGRLGEAGSVGPRGSLGR
RGLPGLKGVLGETGELGSQGEPGYPGPQGPRGRQGLPGVFGQNGSPGAQGNPGPPGPNGS
KGPDGPRGPKGELGPAGERGPRGQRGPRGQPGLFGPDGHGHPGRKGKKGEPGFPGHPGVQ
GEDGNPGRGGEKGAKGVRGKRGNSGFPGFAGTPGDQGPPGKMGIKGSKGLSDRTPCEIVD
FVRENCPCSKGISRCPAFPTEVVFALDMSNDVSQSDFERMRNILLSLLMKLEVSESNCPT
GARVAIVSYNRKIDYLVRLSDHRGKAALLQAVRKIPLERSSGSRNLGATMRFVARHVFKR
VRSGLLMRKVAVFFQAGRNYDTTSVSTAMLELHAADVVTAVVTFTEEHNLPEALLVDGPN
EFHLFMWETERQQDMERLSSCTLCYDKCRPAPGCRLDAPRPQALDMDLVFLVDSSQGVSK
DIYLGALRLVDSVIKDLEVAAQPDTSWHGARAALLTHTTPGFWPGVDQAPVLEYFHLTSH
GHRTQMRRQIREAASGLLQGVPALGHALEWTLENVLLSTILPRRSQLLFAIVASETSIWD
REKLRAVSQEAKCKGITLFVLAVGPGLGAQELAELARVASAPPEQHLLRLEGVSEAEVAY
ASRFTEAFLNLLKSGINQYPSPELIKECGGPNRGDTLLQFFTAAKRFSKRQFGTSSAFAN
DSEALKSPGIFLEEKRRSRMVSVAQQEALGSHGKDREDTEEIDQETPAKGRHLGASHGPC
SMDPGEGKCPNYVQK
NT seq
6348 nt
NT seq
+upstream
nt +downstream
nt
atggacactcggaagagagtttgcttgattatcttccttgcagctggtttgggcttcgtc
aagtcacaaaggattgtctgcagggaggcgtctgtgggagacattgtgcttctggtccac
agtagcatcaacccccagcatgcccacagtgtgcggaacttcttgtctatattggcaaac
agtttccaagtcggcagagagaacatccgtgtgagtctggccttgtacggtgatagacct
acgtctgagttcctgctttcggcctatcccggcaaaggcgatgtgttgaaacacatccgt
ggacttcagtttaagcccggaggcaacaggatggggcaggccctgcagttcatcctagag
catcacttccaggaaggagccgggagtcgggcaagccaaggggtgcctcaggttgcggta
gtgatgagcagtggtctagccgaggaccacattcgcgaacccgcagaggctctcaggaga
gcgggaatcttgctgtacgctattggggtcaaagacgcatctcgggctgaactcagggag
attgcgagtagtcccaaggataacttcaccttttttgttcccaacttttctggcttgcct
ggccttgcccagaagctgcggtcacagctctgcagtactctagcaactacggcagctcaa
tatactgagccggagtctccagagtctactgagacctacgcggatgtggtctttcttatt
gacacctcccaggggacatcacaggccagtttccagtggatgcagaatttcatctctaga
attattggcatcctggaggttggcaaggacaaataccggattgggctggctcagtatagc
gatcaaggtcacactgagtttttgttcaatacccacaagactgggaatgagatggtcaca
cacatccgtgaacacttggtgctccgaggtggctccaggaggacaggtcaaggccttcgg
tttcttcatcggactttctttcaggaggcagcaggaagccggttcttacagggtgtccct
cagtatgtggtagtcattacctcagggaaatctgaggatgaggtccaagaggctgcacag
accctgaggacgagaggcgtgggcattatgtctgtgggcttacaggactttgacaggaga
gaactggaggggacagggcctgtagtgcttgtgtctgacctgaagggagaagatggagtc
agacagctgatacaggatgtgactatgttgatccaggggagtccacagcctccacaggtc
atgatcgaggttgcaaaggaagctgcagaagcgtgtctggcttccattccggctgacctg
gtattcctcattgaggactttagcagtgttgggcaagccaatttccagcaagtcgtccat
ttcttgaagactactgtcaactctttcaatatccacccatatgccacgagagtcagcttg
gtcttttacagtgagaaaccacggctggagttttacctagatacgtttcaaaatgctgcc
caagtcttacgccacctggacaggttaactttccaggcaagaagaggaaggacgaaggca
ggtgctgctttggatttcctgaggaaggaagttttccttccagagaagggcagccggccc
agtcagggcatacagcagatagctgtggtcatcatggaaagtccttctctagacagtgtg
tctacacctgcttcccagctccgcagggctggggtcaccgtctatgcagcgggcatccag
cctgcttctgagagtagagacctggagaagattgtcacatatcctccctggaagcatgcc
gtccgcctagagtcctttctgcaactcagtgttatgggaaacaaacttaaaaagaagctc
tgttctgagactttgagcctagggcttcctggggtgagctatagtttagaaagcacacta
caaagcacaccacaaagctgcatgagcgtggagaaggcggatatttatttccttattgat
ggatctggcagcatcaaaccagacgacttcactgaaatgaaggacttcatgaagaaggcg
ataaagatgttccacattgggcccgacagagtacgatttggagtcgttcagtactcagac
aaaattataagccgttttttactcaccgagtatgccagcatggcagagctgaggacagcc
attgacaacatccagcagggaggaggcggtaccaccaccggtcaggccttaagcgaaatg
gccttggtctttgaaaacactgccagaatcaacgttgcccgatacctcattgtcatcact
gatggccagtctacagacccggtggctgaggctgcacagggactgagggacatcggagtc
aatatttatgccattggagtaagggatgctaatacaaccgagcttaaggaaatagcaaac
aaccagatgtttttcatacatgagtttgactctttgaaagacctccaccaggaagtcatc
caggacatctgctcctcagagaactgtaagagccggaaagctgacatcatctttttgatt
gatggctcagaatccatcgatcctgaagactttaaaaaaatgaagaacttcatggagagg
atggtgaaccagtctaatatcggtgctgatgaaattcagattggccttctacagttcagc
tccactgcccgggaagaattcaggctcaaccactacttctcaaaggtggaaatgtgcaga
gccatcttgaatgtccaacagatgaacactggtaccctaactggggaagccttgaatttc
actctgcccttttttgacagttcaagaggagggagacccagagttcatcagtatttgatt
gtgatcaccgacggggtctcccacgataatgtggcttctccagccaaagccctcagggac
agaaatataattatttttgctgttggggtgggaaaggctcgaagagcccagcttttggag
atcactaatgaccaggacaaagtataccatgaagaaaattttgattccctgcagaacctg
gaaaaggaaattttttatgaggtctgtagcccccaaggatgcgacgtggatctgtctgta
ggagtggatacctcagcttcttcagagcgagctcagcaggaacttcaaaggttgctcccc
gggctgatgcaacagctgactttgctctctaacatcagctgtgaggctcctggccagatg
gagctgaggttccgctatgtggttccaggctccatccgccagcctgtctttgactcaggc
tttgagaaatacagtgatgagaccatccagaagttcttggtgcatcacagttctgtgaac
aaccgtatggatgtagactttctgcagtccctaggagagactgccatctaccagtctttt
gctaaagtgaaggtccttttagtgtttacagacggacttgatgaagacctagagaggctg
aggagaaccctggagctccttcgcagcagagggttctcgggactgctgctcattggcctg
ggaggtgctcctaagttagaagagctgcaggagctggagtttggcagagggtttgtgtac
aggcagcctctgagctccagtctgccgtccctcccaagcgtcttactgaagcaactcgac
acaattgtggagaggacctgctgtaatgtgcaggccaagtgttatggagacgatggggtc
agaggtgatcctgggagtctcggggaggagggagagaggggtttggacgggctccccggc
catcctggtgaagagggagaccacggacaaagaggcccccgaggtcttcctggactccga
ggtgagcaaggatgtccaggtgtgagaggacctaagggagcaagaggcttttcaggagag
aagggcaaccctggtgaggaaggtgttgggggcttagatggagaacagggtgatcgtgga
gccgcagggttgtctggagagaaaggaagcagtggcagtcggggctcgacaggtctgcct
ggaccaactggacctcgtggggagcctgggctgaggggagatcccggggatcctggaatt
gataatttcatccaaggccccaagggagaaaagggaaggcgtggacatcagggaagttct
ggtttccatggacgtctgggggaagctggcagtgtgggacctcgggggtcacttggaaga
cgtggcttgccagggttgaagggtgtgcttggagaaactggtgagctgggttctcaagga
gagcctgggtatccaggcccacagggacccagaggaaggcagggactaccaggagttttc
ggtcaaaatgggagtccaggtgcccaggggaatcctgggcctccagggccaaatggctca
aaaggaccagatggacccaggggaccaaagggagaactcggtcctgcaggagaaagaggt
ccacggggtcagcgagggccaagagggcagcctggtctttttggtccagatggccacggt
catccaggaagaaaaggcaagaagggtgaacctggattccctggccatcctggtgtgcaa
ggagaagatggtaacccaggccgtggaggagagaaaggggccaagggagttcgcgggaag
aggggcaattctggatttcctgggtttgctggaactccaggtgaccaaggcccaccagga
aaaatgggcatcaagggctcaaaaggcttgtcagataggacgccttgtgaaattgttgat
ttcgtgcgagaaaactgcccttgctcaaaaggtatctctagatgcccagcattcccaacg
gaagtggtctttgccttggacatgtccaatgatgtctcccagtcagactttgagaggatg
agaaacattttattatctctgttgatgaagctggaagtgagtgagagcaactgccccact
ggtgcccgagtggccattgtttcctacaacaggaagatagattatctagtgcgcttgtca
gaccaccggggaaaagctgcccttctacaggctgtcaggaaaatccccctggaacgctca
tctgggtcccggaaccttggggccaccatgaggtttgtggctagacatgtattcaaacgt
gtacgctcaggccttctgatgaggaaggtagccgtgttcttccaggcgggtaggaactat
gacacaacctctgtcagcacagccatgctggaactccatgcagcggacgttgttacagca
gtcgtgaccttcacagaggagcacaaccttccagaagccctactggtggatggacccaac
gaatttcacttgtttatgtgggagaccgagcgccagcaggatatggaacgcctgtccagc
tgtacgctctgctatgacaagtgccgaccagccccagggtgccgtttggatgctcccaga
cctcaggcgttggacatggacttggtattcctggtggacagctcccagggtgtcagcaag
gacatataccttggggctttgcggctagtggattcagtgatcaaggacctggaggtggct
gcacagcctgacacatcctggcacggggcacgcgcggccctgctgacacacacaactcca
ggcttttggcctggtgtggatcaagcccctgtacttgaatacttccacctgacctcccat
ggccaccggacacagatgcgaagacagattcgggaggctgcgagtggcctgctacaggga
gtccccgccctgggccacgctctggagtggacactggaaaatgtgctcctatcaaccata
ctgcctcggaggtcacaactcctctttgccatcgtggccagcgagacaagcatctgggac
agagagaagctaagggccgtgtcccaggaagccaagtgcaagggtatcacactgttcgtg
ctggccgtgggcccaggactgggagcccaggaactggctgagttggccagagtggccagt
gcacccccggagcagcacctgttacgcctggaaggtgtctcagaggcagaggtagcctat
gccagcagattcacagaggccttcctaaaccttctaaaaagtggaataaatcaatatcca
tccccagagctcattaaagagtgtggaggcccaaaccgtggggacaccttgctgcagttc
ttcactgctgccaagaggttctctaagcgccagtttggcacgtcttctgcctttgcaaat
gactcagaagcgctcaagtcacccggcatctttctagaggagaagaggagaagcaggatg
gtgtccgtagctcagcaagaagcactgggaagtcatggaaaggacagggaagacactgaa
gaaattgatcaggaaacgcccgcaaaaggaagacatttgggcgccagccatggtccttgt
tccatggatcccggggaaggcaagtgcccgaattatgtccagaagtag
DBGET
integrated database retrieval system
