Arvicanthis niloticus (African grass rat): 117700566
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Entry
117700566 CDS
T08817
Symbol
Tnpo1
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117700566 (Tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117700566 (Tnpo1)
03009 Ribosome biogenesis [BR:
anu03009
]
117700566 (Tnpo1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117700566 (Tnpo1)
Ribosome biogenesis [BR:
anu03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
117700566 (Tnpo1)
Pre-60S particles
117700566 (Tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
Vac14_Fab1_bd
TOR1L1_N
IBN_N
HEAT_EF3_N
TPR_IPO5
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
MMS19_C
CEP104-like_TOG
HEAT_GCN1_C
INTS7_N
HEAT_GCN1_C_2
UNC45-central
TPR_TTI1_C
Dopey_N
VPS15-like_hel
ARM_TBCD
DUF3689
Motif
Other DBs
NCBI-GeneID:
117700566
NCBI-ProteinID:
XP_034348342
LinkDB
All DBs
Position
Unknown
AA seq
898 aa
AA seq
DB search
MVWDRQTKMEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIF
VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGI
LITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL
NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEAEVR
KNVCRALVMLLEVRMDRLLPHMHSIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV
LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHEED
GIEEEEDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV
VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ
PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK
YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS
VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLA
EGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI
LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA
ITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF
IFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSEQFPLPLKERLAAFYGV
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgggaccggcaaaccaagatggagtatgagtggaaacctgacgagcaagggctt
cagcagatcctgcagctgctcaaggagtcccagtccccagacaccaccatccagaggacc
gtgcaacaaaaactggaacaactcaatcaatatccagattttaacaactacttgattttt
gttcttacaaaattaaaatctgaagacgagcccacgcggtcattgagtggtctgatcttg
aagaacaatgtgaaagctcattttcagaacttcccgaatggtgtgacagacttcatcaag
agtgaatgtctaaataatattggggactcctctccgctgatcagagctactgttggtatt
ttaattaccaccatagcctccaagggagaactgcagaattggcctgatctcttaccaaag
ctctgtagcctgctggattctgaggactacaacacctgtgagggagcattcggtgccctt
cagaagatatgtgaggactctgccgagattttagacagtgatgtcttagatcgccctctc
aacatcatgatccccaagtttttacagtttttcaagcacagtagtcccaaaataaggtct
cacgctgttgcctgtgtcaatcagttcatcatcagtcggacccaagcgctcatgctgcac
atcgactctttcattgagaacctgtttgcactggctggggatgaagaagcagaggtgcgg
aagaacgtgtgccgggcgctggtgatgctgctggaggtccgaatggaccgcctgcttcct
cacatgcacagcatagtcgagtacatgctgcagaggacccaagaccaagatgagaatgta
gctctggaggcctgtgaattctggctgactttggctgaacagccaatatgcaaagatgta
cttgtaagacatctgcctaagttgattcctgtgttagtgaatggcatgaagtactcagat
atagatattatcctgcttaagggtgatgttgaagaagatgagaccatccctgatagtgag
caggatattcggccacggtttcatcgctcaaggacagtggctcagcagcatgaggaggat
gggattgaggaggaagaggacgacgatgatgaaattgatgatgacgatacaatttctgac
tggaacctgagaaaatgttctgctgctgctctcgacgttctggcaaatgtttatcgtgat
gagcttttgccccacattttgccacttttgaaagaattgcttttccatcatgaatgggtt
gtaaaagaatctggtatcctggttttaggagcaattgctgaaggttgcatgcaaggcatg
attccatatctgcccgagctcattcctcaccttattcagtgcctctctgataaaaaggct
cttgttcgttccatcacctgctggactcttagccgctatgcacactgggtagtcagccag
ccaccagatacatacctgaagccattaatgacagaattgctgaagcgtatcctggatagc
aacaagagagtacaagaagctgcttgcagtgccttcgctacattagaagaggaggcttgt
acagagcttgtcccttaccttgcttatatactcgataccctcgtcttcgccttcagcaaa
taccagcataagaacctgctcattctgtatgatgccatagggaccctggcagattcagtg
ggacatcatttaaacaaaccagaatatattcagatgctaatgcctcctctgatccagaaa
tggaacatgttaaaggatgaagacaaagatcttttccctttactcgagtgcctctcatct
gttgccacagccttgcagtctggcttccttccgtattgtgaacctgtatatcagcgttgt
gtaaacctagtacagaagactctagcacaagccatgctaaacaatgctcaaccagagcaa
tatgaagctccagataaagattttatgattgtggctcttgacttactcagtggcctggct
gaaggcctgggaggcaacattgagcagctagtggcccgaagtaacatcctaacactaatg
tatcagtgcatgcaggataaaatgcccgaagttcggcagagttctttcgcattactaggt
gatctgactaaagcttgctttcagcatgttaagccttgtatagctgatttcatgccaata
ttgggaaccaatctaaatccagagtttatttcagtctgcaacaatgccacctgggcgatt
ggggaaatatcaattcaaatgggtatagagatgcagccttacatccccatggtattgcac
cagcttgtggagatcattaacagacccaacaccccaaagacgctgttggagaacacagca
ataacaattggtcgtcttggttacgtttgtcctcaagaggtggcccccatgctacagcag
tttataagaccctggtgtacctctctgagaaacataagagacaatgaagaaaaagattca
gcattccgtgggatttgtaccatgatcagtgtgaatcccagtggcgtaatccaagatttt
atatttttttgtgatgctgttgcatcatggattaacccaaaagatgatctcagagacatg
ttctgtaagatccttcatggatttaagaaccaagttggggatgagaactggaggcgattc
tctgagcagttcccccttcccttaaaggagcgcctcgcagctttctatggtgtctaa
DBGET
integrated database retrieval system
