KEGG   Arvicanthis niloticus (African grass rat): 117711501
Entry
117711501         CDS       T08817                                 
Symbol
Col1a1
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K06236  collagen type I alpha
Organism
anu  Arvicanthis niloticus (African grass rat)
Pathway
anu04151  PI3K-Akt signaling pathway
anu04510  Focal adhesion
anu04512  ECM-receptor interaction
anu04518  Integrin signaling
anu04611  Platelet activation
anu04820  Cytoskeleton in muscle cells
anu04926  Relaxin signaling pathway
anu04933  AGE-RAGE signaling pathway in diabetic complications
anu04974  Protein digestion and absorption
anu05146  Amoebiasis
anu05165  Human papillomavirus infection
anu05205  Proteoglycans in cancer
anu05415  Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:anu00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    117711501 (Col1a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117711501 (Col1a1)
   04518 Integrin signaling
    117711501 (Col1a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117711501 (Col1a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117711501 (Col1a1)
 09150 Organismal Systems
  09151 Immune system
   04611 Platelet activation
    117711501 (Col1a1)
  09152 Endocrine system
   04926 Relaxin signaling pathway
    117711501 (Col1a1)
  09154 Digestive system
   04974 Protein digestion and absorption
    117711501 (Col1a1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    117711501 (Col1a1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    117711501 (Col1a1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    117711501 (Col1a1)
  09166 Cardiovascular disease
   05415 Diabetic cardiomyopathy
    117711501 (Col1a1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    117711501 (Col1a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:anu00536]
    117711501 (Col1a1)
Glycosaminoglycan binding proteins [BR:anu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117711501 (Col1a1)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd Fn1_2
Other DBs
NCBI-GeneID: 117711501
NCBI-ProteinID: XP_034363101
LinkDB
Position
6:complement(27445952..27462770)
AA seq 1454 aa
MFSFVDLRLLLLLGATALLTHGQEEDIPEVSCIHNGLRVPNGETWKPDVCLICVCHNGTA
VCDDVLCREDLDCPNPQKREGECCAFCPEEYESPDSEVIGVEGPKGDPGPQGPRGPVGPP
GKDGIPGNPGLPGPPGLPGPPGPPGLGGNFASQMSYGYDEKSAGVSMPGPMGPSGPRGLP
GPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ
GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGER
GRPGPPGTAGARGNDGAVGAAGPPGPTGPTGPPGFPGAVGAKGEAGPQGSRGSEGPQGVR
GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPK
GNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGP
GSRGFPGADGIAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPD
GKTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA
GKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAP
GPSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMP
GERGAAGLPGPKGDRGDAGPKGADGSPGKDGARGLTGPIGPPGPAGAPGDKGETGPSGPP
GPTGARGAPGDRGEAGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGPAGPAGPP
GPIGNVGAPGPKGSRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPR
GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGER
GFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAP
GAKGDRGEVGPPGPPGAPGAPGAPGPVGPAGKSGERGETGPAGPAGPIGPAGARGPTGPQ
GPRGDKGETGEQGDRGIKGHRGFSGLQGPPGAPGSPGEQGPSGASGPAGPRGPPGSAGSP
GKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKAH
DGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWK
SGEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPKEKKHVWFGESM
DGGSPFKYGSEGSDPDDVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKSLLL
QGSNEIELRGEGNSRFTYSTLEDGCTSHTGTWGKTVIEYKTTKTSRLPIIDVAPLDIGAP
DQEFGIDIGPACFV
NT seq 4365 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggacctccggctcctgctcctcttaggggccactgccctcctgacg
catggccaagaagaagacatccctgaagtcagctgcatacacaatggcctaagggtccct
aatggtgagacgtggaaacccgatgtatgcttaatctgtgtctgccacaatggcacagct
gtgtgcgatgacgtgctatgcagagaagacttggactgtcccaacccccaaaaacgggag
ggcgagtgctgtgctttctgcccagaagaatatgaatcaccagactcagaagtcatagga
gttgagggacccaagggagaccctggcccccaaggcccaaggggacccgttggcccccct
ggaaaagatggcatccctggaaatcctggacttcctggtcctcctggtctccctgggccc
cccggaccccctggtcttggaggaaactttgcttcccagatgtcctatggctatgatgag
aaatcagctggagtttccatgcctggccccatgggtccttctggtcctcgtggtctccct
ggcccccctggtgcacctggtcctcaaggtttccaaggcccccctggtgaacctggcgag
cctggcgcttcgggtccaatgggtccccgaggtccccctggccctcctggcaagaatgga
gatgatggggaagctggcaagcctggccgtcctggtgagcgtggacctcctgggcctcag
ggtgctcgtggattgcctggaacagctggcctccctggaatgaagggacaccgaggtttc
agtggtttggatggtgccaaaggagatgctggtcctgctggtcctaagggagagcctggc
agtcctggggaaaatggggctcctggccagatgggtccccgaggtctgcccggtgagaga
ggtcgccctggaccccctggaactgctggtgctcgtggtaacgatggtgctgttggtgca
gctgggccccccggtcccaccggccccactgggcctcctggcttccctggtgcagttggt
gctaagggtgaagctggtccccaaggatcccgaggctctgaaggtccccagggtgtgcgt
ggtgaacccggaccccctggccctgctggtgctgctggtccagctggaaaccctggtgct
gatggacagcctggtgctaaaggtgccaatggtgctcctggtattgctggtgctcctggc
ttccctggtgcccgaggcccctctggacctcagggccccagcggcgctccaggtcccaag
ggtaacagcggtgaacctggtgctcctggcaacaaaggagacactggtgccaaaggagaa
cccggccctgctggagttcaaggtccccccggccctgctggagaagaaggaaaacgagga
gcccgtggtgagcctggacccagtggcctccccggacctcctggcgagcgtggtggacct
ggtagccgtggtttccctggtgctgatggtattgctggccccaagggtcctgctggtgaa
cgtggttctcccggccctgctggtcccaaaggttctccaggtgaagccggtcgccctggt
gaagctggtctccctggtgccaagggtctcactggcagccctggcagccctggtcctgat
ggcaaaaccggcccccctggtcccgctggtcaagatggtcgccctggacccgcaggtcct
cctggagcccgtggccaggctggtgtgatgggattccctggacctaagggtgccgctgga
gaacctggaaaggctggagagcgaggtgttcctggaccccctggtgctgttggtcctgct
ggcaaagatggagaagctggagctcagggagcccctggccctgctggtcctgctggtgag
agaggtgaacaaggtcctgctggctcccctggattccagggtcttcctggtcctgctggt
cctcctggtgaagcaggcaagcctggtgaacagggtgttcctggagaccttggtgcccct
ggaccctctggtgccagaggcgagagaggtttccctggtgagcgtggtgtacaaggtccc
ccaggtcctgctggtccccgaggaaacaatggtgcccccggcaatgacggtgccaagggt
gatactggtgcccctggagctcccggtagccagggtgcccccggtcttcagggaatgcct
ggtgaacgtggagcagctggtcttccaggtcctaagggtgacagaggtgatgctggtccc
aaaggtgctgatggttctcctggcaaagatggcgcccgtggtctgactggtcccattggt
cctcctggccctgctggtgcccctggtgacaagggtgaaactggtcccagtggtcctccc
ggccccaccggagcccgtggtgctcccggagatcgtggtgaggctggtccccctggccct
gctggcttcgccggcccccctggtgctgatggccaacctggtgcgaaaggtgaacctggt
gatactggtgttaaaggtgacgctggtcctcctggccctgctggtcctgctggacccccc
ggccccattggtaatgttggtgctccgggacccaaaggttctcgtggtgctgctgggccc
cctggtgctactggtttccctggtgctgctggtcgtgttggtccccctggtccctctgga
aatgctggaccacccggccctcctggtcctgttggcaaagaagggggcaaaggtccccgt
ggtgagactggtcccgctggacgtcctggtgaagttggtcccccaggtccccctggccct
gctggtgagaaaggatctcctggtgctgatggacctgctggctctcctggtactcctgga
cctcagggtattgctggacagcgtggtgtggtcggtcttcccggtcagagaggagaaaga
ggcttccctggtcttcctggcccctctggcgaacccggcaaacaaggtccttctggagca
agtggtgaacgcggtccccctggccccatgggcccccctggattggctggtccccctggt
gaatctggacgtgagggatctcctggtgctgaaggctcccctggaagagatggcgctcct
ggtgccaagggtgaccgtggtgaggttggccctcctggcccccctggtgcccctggtgct
cctggtgctcctggtcctgttggccccgctggcaagagtggcgagcgtggtgagactggt
cctgctggtcctgctggtcccattggccctgctggcgcccgtggtcctactggaccccaa
ggcccccgtggtgacaagggtgagacaggcgaacaaggtgacagaggcataaagggtcat
cgtggcttctctggtctccagggtcctcctggcgctcctggttctcccggtgaacaaggt
ccctctggagcttctggtcctgcaggtccccggggtccccctggctctgctggttctcct
ggcaaagatggactcaacggtctccctggccccattggtccccctggtcctcgaggtcgc
actggtgatagcggtcctgctggtccccccggccctcctggaccccctggccctcctggt
cctcccagcggtggttatgacttcagcttcctgcctcagccacctcaagagaaggctcat
gatggtggccgctactaccgggccgatgatgccaacgtggtccgtgaccgtgaccttgag
gtggacaccaccctcaagagcctgagccagcagattgagaacatccgcagccccgaaggc
agccgcaagaaccccgcccgcacatgccgtgacctcaagatgtgccactctgactggaag
agcggagagtactggatcgaccctaaccaaggctgcaacctggacgccatcaaggtctac
tgcaatatggagacaggtcagacctgtgtgttccccactcagccctctgtgcctcagaag
aactggtacatcagcccgaaccccaaggaaaagaagcatgtctggtttggagagagcatg
gacggtggatccccgttcaagtacggaagcgagggctccgaccccgatgatgttgctatc
cagctgaccttcttgcgcctgatgtccaccgaggcctcccagaacatcacttatcactgc
aagaacagcgtagcctacatggaccaacagactggcaaccttaagaagtccctgctcctc
cagggctccaacgagatcgagctcaggggcgaaggcaacagtcgcttcacctacagcacc
cttgaggatggctgcacgagtcacaccggaacttggggtaagacagtcatcgaatacaaa
accaccaagacctcccgcctgcccatcatcgatgtggcacccttggacatcggtgcccca
gaccaggaattcggaatagacattggccctgcctgcttcgtgtaa

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