Arvicanthis niloticus (African grass rat): 117711909
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Entry
117711909 CDS
T08817
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117711909 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117711909 (Parn)
Enzymes [BR:
anu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117711909 (Parn)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117711909 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117711909
NCBI-ProteinID:
XP_034363738
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All DBs
Position
6:complement(102780126..102905917)
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AA seq
624 aa
AA seq
DB search
MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHTNSKHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGSLAKCPVTIPEDQKKFIDQVIKK
IEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKVDEE
ERKRREQERYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPAD
LNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP
SYDTASEQLHEAGYDAYITGLCFISMANYLGSLLSPPKMCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ
PEQVQIAVNTSKYAESYRIQTYAEYVGKNREGKQVKRKWTEDSWKEVDRKRPHVSGPCYH
TNSSTAAGMVGKRTLSPDQGEAGLEERESEEISDSELEHTDSCADPLPEGRKKAKKLKRM
KKELSLAGSVSDSPPVLFEVPDTW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccggagcaattttaagattaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttttcaggaatcagcgatggaccctcagta
acagcattaacaagtggttttgacaccccagaagagagatatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgtgcttttaaatatgaccacaccaat
tccaagcatgtaacgaagtcatttaacttctatgttttccccaagcctttcagtaggtcc
tcaccagatgtcaaatttgtttgccagagctccagcattgacttcctggcgagccaagga
tttgactttaataaagtgttttgcagtggaattccatatctgaatcaggaagaagaaaga
cagctgagagagcaatttgatgaaaaacgctctcaagccaatggggcaggatctctggca
aaatgtcctgtgacgattcctgaggatcagaagaagtttattgaccaagtaataaagaag
atagaggatttcctacaaagcgaagagaagaggagcctggaacttgacccgtgcactggg
tttcaaagaaaacttatttatcagactttgagttggaagtatcctaaaggcattcatgtt
gagacattagagaccgacaagaaggagagacacatagttatcagcaaagtggatgaagaa
gaacgcaaaaggagagagcaggagaggtacacaaaggagcaggaggaactgaacgatgcc
gtggggttttcaagagtcatccacgccattgctaattcggggaaactggttgttggacac
aacatgctcttggatgtcatgcacacaattcaccagttctactgccccctgcccgcggac
ctgaatgagtttaaggagatgacaacatgtgtcttccccagactcttggatacgaagttg
atggccagcacacagccttttaaggatatcattaacaacacatcccttgcagagttggaa
aagcggttgaaagagacaccttttgaccctcctaaagtcgaaagtgcagaaggctttcca
agctatgacacagcatctgagcagcttcacgaggcagggtatgatgcctacatcacagga
ctctgcttcatctccatggctaattacttaggttctttactcagtccaccaaaaatgtgt
gtgtccgccagatcaaagctcattgaacccttttttaacaagttatttcttatgagggtc
atggatattccctatttaaacttggaagggccagacttgcagcctaagcgagatcatgtt
ctccatgtgaccttccccaaagagtggaaaaccagcgacctgtaccagctcttcagtgcc
tttggtaacattcagatatcctggattgatgacacatcagccttcgtttctctcagccaa
cccgaacaagtacaaattgctgttaataccagcaagtatgcagaaagttatcggatccag
acctatgctgagtatgtggggaaaaatcgggaaggcaagcaggtcaagaggaagtggaca
gaagatagctggaaggaggtggacagaaagcggccccatgtgtcaggcccctgttaccac
accaacagctccacagcagctggcatggttggaaagagaactctgagtcccgaccaaggg
gaagctggcttggaggaacgagaatcagaggagatctctgactctgagcttgaacacaca
gattcctgtgcagaccctctcccagagggaaggaaaaaggccaagaagttaaaaagaatg
aagaaggagctttccttggcaggaagtgtctccgatagcccccctgtgctctttgaagtc
cctgacacgtggtag
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