Arvicanthis niloticus (African grass rat): 117723068
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Entry
117723068 CDS
T08817
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117723068 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117723068 (Cnot1)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117723068 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117723068 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117723068
NCBI-ProteinID:
XP_034378340
LinkDB
All DBs
Position
18:complement(22966209..23055325)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPSTSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttactacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacgcagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcaacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtcatttttggtcttgcccttttgaattcttctagcccagat
ctcaggggttttgctgcccagttcatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttctgaagacactacgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgattctggaggggtagctaagaccatgatggagagctctctggctgacttcatgcag
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcggaca
cactcaggattaacagacggtataccattacagagcatctctgcccctggcagtgggatc
tggagtgatggaaaagataagagcgagggggcacaggcacacacgtggaatgtagaggtt
ttgattgatgttcttaaagaattgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaaggacttcacaatgtggtttatggc
attcagaggggtctgggcatggaagtgtttccagtagattttatatatagaccttggaaa
catgcagaaggccagctctcctttatccagcattccctgataaacccagaggtcttctgc
tttgctgactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtgaaacaactcttcagctttcctatcaaacactgt
cctgacatgttggtattggccttacttcaaatcaacacctcctggcacaccctacgccac
gaactcatttctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggagcagtatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcgatgctgctgaacggcactccatttgcc
tttgttattgaccttgctgcactcgcgtctcgtcgagaatacctcaaacttgacaagtgg
ctaacagacaagataagagagcatggggagccttttatacaagcatgcatgactttttta
aagagaagatgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgcgggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgcagtaatgta
atgaataaggccagacagccacctcctggagttatgccaaaaggtcgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcagggttttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcgtttccaccactgtcaacccca
aatcaaacaacggccttcagtggtattggaggactgtcatcacagcttccagtaggtggt
cttggcacaggaagcctgactggtataggaactggggcccttggacttcctgcagtgaac
aatgatccttttgtgcagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaagcaaatcagcacttt
agtaaagaaatagatgatgaagccaacagctatttccagcgaatatataatcacccacca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagcgagaagtatttaactgtatgctgaggaacttatttgaagaatatcgg
tttttcccccagtaccctgataaagaattacatataacagcctgcttgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttaaggaaaccttttggatccaaaatgtattattttggtattgctgcactagataga
tttaagaatcggttgaaggactatcctcagtattgtcagcacctggcttctatcagtcac
tttatgcagttcccacatcatttgcaggagtacatcgagtacggacaacagtctcgagat
cctcctgtgaaaatgcagggctctatcactacccccggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgcaggtcaagttaatacaatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaacacaacaaatatcgatacattacttgtg
gccacagatcaaactgagaggattgtggagcccccagaaaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacagaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattcaaactttcttgatacattgaagaatcccgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgatcacattagctaaaaataaacccatcttacacacggatttggatgtgaaatctttg
ctgttagaagcttacgttaaaggacaacaagagttgctttatgtagtgccctttgttgcc
aaagttctagagtccagcattcggagtctggtttttaggccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctgcaccaggagcacgacttaaagttaaacttgaag
tttgagattgaggtgctctgtaagaacctcgcattagacatcaatgagctcaaacctgga
aacctgttgaaagataaagaccgcctgaagaacttagatgaacagctctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgccatcacaacaacaacaacttctacaaca
ccgtcgaccagcactacgtgtacagccacagtcccaccacagccacagtacagctaccac
gacatcaatgtctactctctggcaggcctggcacctcacatcactctaaaccctacaatc
cctttatttcaagcccatccacagctgaagcagtgtgtacggcaagcaattgaacgagct
gtccaggagctagtccatcctgtggtggatcgctcaattaagattgctatgactacatgc
gagcagatagtcagaaaggactttgccctggattctgaggaatcgagaatgagaatagca
gctcatcacatgatgcggaacttgaccgctgggatggctatgatcacgtgcagggagcct
ttactgatgagcatatccaccaacctaaagaacagctttgcctcagccctccgtactgca
tccccacaacaaagggaaatgatggaccaggctgctgctcagttagctcaggacaattgt
gaattagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacatgccaggcaggaaggacgtcgatac
tgtgatcctgttgtattaacgtatcaagcggaacggatgccagagcagatcaggctgaaa
gttggtggtgtggacccaaagcagctagctgtctatgaagagtttgcacgaaatgtgcct
ggcttcttaccgacaaacgacttaagtcagcctacagggtttttagctcagcctatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
cagcacctacatgccattccaccaactttggccatgaatcctcaagcccaggctctgcga
agtcttttagaggttgtagtattgtctcggaattctcgggatgcaatagctgctcttgga
ttactacagaaggccgtagaaggcttattagatgccacaagtggtgctgatgctgactta
ctgctgcgatacagggaatgccacctgttggtactgaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataacgtggaggctgtggagttgttgattagaaatcatttggttaacatgcag
cagtacgatcttcatcttgctcagtcaatggagaatggcttgaactacatggctgtggcg
tttgctatgcagctggtcaaaattctgctggtggatgaacggagtgttgcccatattact
gaggcagatctgttccataccattgaaaccctcatgagaattaatgctcactccagaggc
aatgctccagaaggattgccccagctgatggaagtggtgagatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagcagcagctggccgtgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaaaactgatgac
ctcataacaaggttttttcgtctttgcactgaaatgtgtgttgaaatcagttaccgtgct
caggcggagcagcagcacaatcctgctgctaaccccaccatgatccgggccaagtgctac
cacaacctggatgcctttgtccgcctcattgcactgttagtgaagcactctggggaggcc
accaacactgtcacaaagatcaacctgctcaataaggttcttggtatagtagtgggagtt
ctcctgcaggatcatgatgttcgacagagtgaatttcagcaactaccctaccataggatt
tttatcatgctgctgttggagctcaatgcacctgagcatgtgttggaaaccattaacttc
cagactcttacagctttctgcaatacattccacatcttgaggcctactaaagctcctggc
tttgtatatgcttggcttgaattgatctcccaccggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgcacagctgttgattgatttattcaaa
tatttagcacctttccttagaaatgtggaactcactaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgattcctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggac
atgttaagtgaaattaacattgcacctcggatcctgaccaatttcaccggagtgatgcca
cctcagttcaaaaaagatttggattcctatcttaaaactcgatcaccagtcacttttctg
tctgatctgcgtagtaacctacaggtatctaacgagcctgggaatcgctacaacctccag
cttatcaatgcattggtgctctacgtagggactcaggcgatcgcgcacatccataacaag
ggcagcacgccttcaatgagcaccatcacccactcagcacacatggacatcttccagaat
ctggctgtggacctagatactgagggccggtatctcttcttaaatgcaattgcaaaccag
ctgcggtacccaaacagccacactcactacttcagttgcaccatgctgtacctttttgcc
gaggcaaacactgaggcaatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccgcatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccatgaatttgtacactgtgccccggagattgaaaagttattc
cagtctgttgcacagtgctgcatgggacagaagcaggctcagcaagtgatggaagggacc
ggtgccagttag
DBGET
integrated database retrieval system
