Arvicanthis niloticus (African grass rat): 117724503
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Entry
117724503 CDS
T08817
Symbol
Lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03018
RNA degradation
anu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117724503 (Lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
117724503 (Lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117724503 (Lsm2)
03041 Spliceosome [BR:
anu03041
]
117724503 (Lsm2)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117724503 (Lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
117724503 (Lsm2)
Spliceosome [BR:
anu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117724503 (Lsm2)
Complex C
U2 snRNP components
117724503 (Lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
117724503
NCBI-ProteinID:
XP_034380256
LinkDB
All DBs
Position
20:49540116..49543503
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AA seq
131 aa
AA seq
DB search
MVFWAKLPANPRESPRAPGENGKLALHFRAGDEDFVRLFYSFFKSLVGKDVVVELKNDLS
ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
AARKEALQQKQ
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atggttttttgggcgaaacttccagcaaatccgagagaaagcccacgggcgcccggagag
aacggaaagctagcgttgcatttccgtgccggagatgaggattttgtgaggctcttctac
tcctttttcaagtcccttgtgggcaaggatgtagtcgtggaactcaagaatgacctgagc
atctgtggaaccctccattctgtggaccagtacctcaatatcaaactaaccgacatcagt
gtcacagaccctgagaaatacccacacatgttatcagtcaagaactgcttcatcaggggc
tccgtcgtccgctatgtgcagctgccagcagatgaggtggacacacagctgctccaggat
gcagcaaggaaggaagcccttcagcagaaacagtga
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