Amphiprion ocellaris (clown anemonefish): 111570769
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Entry
111570769 CDS
T06018
Symbol
skic3
Name
(RefSeq) LOW QUALITY PROTEIN: SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111570769 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111570769 (skic3)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111570769 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_8
TPR_17
TPR_11
TPR_CcmH_CycH
TPR_12
TPR_9
TPR_7
ANAPC3
TPR_Slam
TPR_15
ARM_TT21_C
ARM_TT21_N
COG4_N
Motif
Other DBs
NCBI-GeneID:
111570769
NCBI-ProteinID:
XP_023129469
Ensembl:
ENSAOCG00000002134
LinkDB
All DBs
Position
6:21204528..21220777
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKAALKSAREAIKNKEFKEALKHCKTVLKLEKNNYNAWVFIGLAASELEQPDQSQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYQKLVELYASSDKKKCYEVIK
KLSDIYQSDKEYSKLAEVWLQLVQLKEEEAVDKKELVQLLQQMTQLLSDCLNEEEQDNET
QQHIITAFEKAMVLMDPVPGEEHKKVSADYIKCLSKMPLEENKMKVACQSMLSLYPNQSY
PLEVLCSHYLKTGYLDEDAVSSFTKLLDLTPNNGLGHLGLGTKALQERRYQDAIKDLSQG
LKKMSSTTGWYNLAEAQFKVHRYSNSATSCSQGLNICVSGDKELRVKLLRLKLEATVRSG
GEKAAEQALEMFSQISEAEKDPVLLVLKGRAHLNKGQINQALKVSSELAISNPNLAEGFA
LRGLIHIAEGQQHQGEQSFLKATKQRPDCGEFYFLLGQLYWDMGEETRKDRSKAHTHLLK
AAKLDPHLGCVFRYLGHYYRDVANDYGRAQGCYKKAFQLDDDDAESGAASVDLSMRQEDM
DTALSILQSVIEKATPGSAKWAWMRRGLYYLKTGEHQQAISDLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPCSIYSVYQAAAIKQTLGKFKEAVSEYLQITAQQDY
VPALKGLGECQLSLAKTLMEDCRDGGAIDLIQQAIQNLFRAVQLRPDLSCLWKLLGDACT
TVCIVSPNKARVLVPALLAGLDPNTEGHMLNQSQVLKAGERCYAHALKLMPEVPSLWYDL
GINYYRQATKPPEGDQTSLSLLLEKAQQCLKKAVMMGSGNHSHWNALGVISMNKGLENYA
LAQHCLIKSIQVEPNNVVAWTNLGTLYLKKDNIELAHKAFKIAQSLEPLYVNCWIGQALI
AENVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNILQMNAISA
AQVALSKYTERIQCDPDAFIMLGYLNEHLQLKRQALQAYQRAVELLQSTSSSEELAFSLG
CYGRALCTSGQWEEAVQVYNSTPLQELSDLVGLALAYCRAGLFPESISAYERALAVASSE
KEKAYILTALALLQNRQGNLDSAKTLLFKCSMLKEPISESLLCLCAVGLVHGDATLASAA
LTELLKQGSASGNVVEQRCLLTCSLLALQGNFSAVQREASRAVHSNPGNASLWALLSRVV
PQYYPRKANGGAVAGHVACLSSMTQGKRALLHSGVNQLASGRNSGEDKHKNALKTMQRAV
LLCPDDPATWAGLMAACHTENTSCYLSGSAPRRQALEXNLMSVVSEKVRNVEEIERPLAQ
TLEGWVLQQAVTGLMLEGQLEQAEALCTQVLNVSPEHPAVMLSLRQVQCQRLLMANSGTV
LPDTVLEQLNNAVMMNPTNLGAWHWLAEVYRNQGLLVQAVMAYRQSLQLASQLGVHSCQV
ASLLRLALLAFGPCMAGVPGNEWQDLVLEATTEVLKLDSSPVALLFQALLQYVTKMAARE
TRRLLERLVYVPSQEFPVTVVQVASWYLLRHLHAKNDQELMNVLLQHAKMNGDQRLLEFH
SLLASSSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataaagaagtaaaagcggctctgaaaagtgccagagaggccattaaaaacaag
gaattcaaagaggctctaaaacactgcaagactgttttgaaacttgagaagaacaattac
aatgcctgggtattcatcggcttggcagccagtgaactggagcagcctgatcaatcacag
acagcctacaaaaaggccgtggaactggagcctgagcagctgctggcttggcagggccta
gcaaatctttacgaaaagactgatcagtgggatttcaaagttgagctacctaacatctat
cagaagcttgtggagctctatgcaagctcagacaaaaagaaatgttatgaggtgatcaaa
aagctgtcagatatctatcagtctgacaaagaatattcaaagttggcagaggtttggctg
cagctcgttcagctgaaggaggaagaggctgtggataagaaagagttagtgcagcttttg
cagcagatgacccagctcctgtcagactgccttaatgaggaggagcaggacaatgaaact
caacagcatataatcacagcttttgagaaggccatggttctcatggatcctgtaccagga
gaggagcacaagaaggtctccgctgactatattaaatgtctttctaaaatgccattagaa
gaaaacaaaatgaaagtggcatgccaatccatgctgtccctctaccccaaccaaagttat
cctcttgaggtcctttgtagtcactaccttaaaacaggttatttggatgaggatgcagtt
agcagtttcaccaaactcctggatctgactcctaacaatggattaggccacttgggtttg
ggtaccaaagcactccaagaaaggaggtatcaagacgccatcaaggacctctcacaagga
ctcaagaaaatgagctcaaccactggatggtataatctggcagaagctcagtttaaagtg
cacagatactccaacagcgctacatcatgctcccaaggtttgaatatatgtgtttctgga
gacaaggagctgagggtcaaactgctgagattaaagctagaggccacagtgagaagtgga
ggagagaaggctgcagagcaggctttggagatgttttcgcagatttcagaagctgaaaag
gacccagttcttttagtgcttaaaggacgtgcacatctcaacaaaggacagattaatcag
gcacttaaggtgtcatcagagctggcgatctccaacccaaacctggctgagggatttgca
ctgagaggactgatacacatagctgaaggccagcagcaccagggagagcagagtttcctg
aaggccacaaagcagagaccagactgtggagagttttatttcttgcttggacaactctac
tgggacatgggagaagagacacgtaaagaccggagcaaagcccatactcacttgctaaag
gctgcaaagttagatccacaccttggctgtgtatttcgctaccttggccattattatcga
gatgtggcgaatgattatggccgtgcacaaggctgctataagaaagcctttcagttggac
gatgacgacgctgagtctggagctgcatcagtggatcttagtatgagacaggaggatatg
gacactgcattatcaatacttcagtcagtgatagagaaagcaactccaggctcagctaaa
tgggcctggatgagacgaggcctttactacctgaagactggagaacaccaacaggccata
tctgatttgcaggcagctctgagagctgatcctgaggactgggtgtgctgggagtgttta
ggtgaggcctaccttaaccgccggagcttcacagccgctctgaaggcctttggtaaggcc
catcagcttcagccctgctccatctacagtgtctaccaggctgctgctatcaaacagact
ttgggcaagttcaaagaggcagtctcagagtacttgcagataacagcacagcaggactat
gttcctgctcttaaaggtcttggggagtgccagctgtctctggcaaaaactttaatggag
gactgcagagatggaggagccattgacctcattcagcaagctatacagaacctcttcaga
gctgtacagttgcgaccagacctgtcttgtttgtggaagctgctgggagatgcttgcacc
acagtttgcatcgtgtctccaaacaaagcccgggttctagtgcctgccttactggctggt
ttggaccccaacacagagggccacatgttgaaccagtcccaggtgctcaaagctggtgag
aggtgctatgctcatgctttgaagctgatgcctgaggtccccagcctttggtatgattta
ggaatcaactattaccgccaggccaccaaaccacctgagggagaccagacctccctgtct
ctgctactggagaaggcccaacagtgtttgaaaaaggctgtcatgatgggcagtgggaac
catagccactggaatgcccttggagtgatttccatgaacaaaggtcttgagaactatgct
ctggctcagcattgcctcatcaagtccatacaagttgagccaaataatgttgttgcctgg
acaaaccttggtaccctgtatttgaagaaggacaacatagagctggcacacaaggctttc
aagattgctcagtccttggagccactttatgtcaactgctggattggacaggcactgata
gcggaaaacgtgggaagctatgacaccatggatcttttcaggcacaccactgaacttagc
acacatatggaaggagtgaaaggttatgcctactgggtttgttccaccctgctggataag
agcaacagagactctgaactgtatcgctacaacattttgcagatgaatgcgatctctgct
gctcaggtggcactcagcaaatacacagagaggatccagtgtgaccctgatgccttcatt
atgctgggctacctaaatgagcatctgcagctgaagaggcaggccttgcaggcttaccaa
agagcggttgaactgcttcagtccacgtcctcttcagaagagctggctttttctctgggc
tgttatggccgggctttgtgcacctctggccagtgggaggaggcggtgcaggtttataat
tctactccactgcaggagctcagtgaccttgttgggctggctctggcctactgcagggca
ggtctcttcccagaaagcattagtgcctatgagcgtgccttggctgtggcttccagtgaa
aaggagaaagcctacatactgacagctttggctttgctgcagaatcggcagggcaacctc
gactcagccaagactctgctgtttaaatgctcaatgttaaaggagccaatctcagagtcg
ctgctgtgtttgtgtgctgtgggattagtccacggtgatgctacactagcttctgctgct
ttgactgagttgctaaaacaaggttcagcctctgggaacgttgtggagcagcgatgtctg
ctcacctgctccttgctggctctgcagggcaacttcagtgccgtacaaagagaagcttcc
agagctgtacacagcaatcctggaaacgcatctctgtgggcccttctctccagagtagta
ccacaatactaccccagaaaggcaaatggtggtgcagtggctggccatgttgcctgtctc
tccagtatgacccaaggaaagagggcgttgttgcacagtggagtgaatcagctagctagt
gggagaaactctggagaggacaagcacaagaatgcactgaagaccatgcagagagctgtt
ctcctttgtcctgatgatccagctacatgggccgggttaatggctgcctgtcacaccgaa
aacacttcttgttatctttctggctctgcccctcgcagacaagcactggagncaaatctc
atgtcagtggtttctgagaaagtgcgtaatgtggaggagatagaacgtcctctagctcag
actctggaaggctgggtactacagcaggcggtgacgggtctcatgctggaggggcagctg
gagcaggcggaggccctctgcacacaggtgctgaacgtgtcccctgaacacccagcagtg
atgctgtcattgagacaagtgcagtgtcagcgcctcctcatggctaatagtggtactgtc
ctccctgacactgtgctggagcagctcaacaatgccgtgatgatgaaccccaccaacctt
ggggcatggcattggctggctgaggtatatcgtaatcagggcctgctggttcaagcagtc
atggcttacagacagagtctgcagctggcctcgcagcttggcgtgcacagctgccaggta
gccagcctgctccgacttgccctgttagcgtttggaccctgtatggcgggtgtcccagga
aatgagtggcaggacctggtgctggaagctactactgaggttttgaagctggactcatcc
ccagtggccctccttttccaggccctcctccagtatgtgaccaagatggctgctagggaa
acaagacgtttgctggagaggctggtatatgttccctctcaagagttcccagtgacagtg
gtgcaggtggccagctggtatctccttagacacttgcatgccaaaaacgaccaggaactc
atgaatgtccttttgcaacatgccaaaatgaatggagatcaaagattgctggagtttcat
tcactgcttgcctcttcttcatcctga
DBGET
integrated database retrieval system
