Amphiprion ocellaris (clown anemonefish): 111577181
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Entry
111577181 CDS
T06018
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03020
RNA polymerase
aoce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111577181
09124 Replication and repair
03420 Nucleotide excision repair
111577181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111577181
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111577181
Enzymes [BR:
aoce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111577181
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111577181
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111577181
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111577181
NCBI-ProteinID:
XP_023139087
Ensembl:
ENSAOCG00000004255
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILTKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAHVQSSLEREFDKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVVEGVHELSKKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTXPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggaatcaaa
taccccgaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggttattgagcgaagtgggagatgtcagacctgtgcaggcaacatgacagaatgccca
ggccactttggacacatagaactggcgaagccagttttccatgtcggcttcgtaacaaag
atcatgaaggttcttcgatgtgtctgcttcttttgctccaagctattagtggattcaaac
aatcctaagatcaaagacatcctgacaaaatccaaagggcagcccaggaagcgtttgacc
catgtgtatgagctgtgcaaaggaaaaaatatctgtgaaggaggagaagagatggacaac
aaatttggaatggaacagcaggagacagaggaggatattaccaaggagaagggccatggt
ggctgtgggcgctaccagccacgcatcagacgctctggcttggagctgtatgctgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcttgctgagtcctgagcgcgtgcat
gagattttcaagcgcatctcagatgaagaagacatcatcttgggtatggaccccaagttt
gccagaccagagtggatgatagtgactgtgctgcctgtgcctccacttgctgtgaggcct
gctgtagtcatgcaggggtctgctcgcaaccaggatgacttgactcacaagctggctgac
attgttaagatcaacaaccagctgagaagaaatgagcagagtggtgcagctgctcacgtc
atagctgaggatgtgaagctgcttcagtttcatgttgccactatggtggacaatgaactg
ccaggcctgccaagggcaatgcaaaagtctggccgccctctcaaatccataaaacagcgt
ctaaaggggaaggagggacgagtgcgaggtaacctgatgggcaagcgtgtggacttctcg
gcccgaactgtcattacgccagaccccaacttgcaaattgaccaagtgggcgtaccacga
tccatcgcagccaacatgaccttcccagaaattgtcacaccctttaatattgacagattg
caagagttggtgcgaagaggcaacagccagtaccctggagctaaatacatcatccgtgac
aatggagacagaattgacttgcgatttcatcctaaaccaagtgaccttcatctgcaaatt
ggctacaaggtggaaagacatatgtgcgatggtgacattgtcatcttcaaccggcaacct
acactacacaaaatgtctatgatggggcacagggttcggatcctgccgtggtccacattt
cgtctcaacctcagtgtcaccacaccatacaatgctgactttgatggggatgagatgaat
ctccacttgcctcagtcccttgagacgagggcagagatccaggagctggccatggtgcca
cgtatgattgtgacaccccaatccaataggcctgtcatgggtatcgtgcaggacaccctc
acagctgttcgcaagttcaccaaaagagacgtcttcttagagaggggtgaagtgatgaac
ctgctcatgttcctctccacctgggacgggaaaatgcctcaaccagctatcctcaaaccc
cgccctttgtggacaggcaagcagatcttcagcctcatcattccaggacacattaatgtg
atccgcacacacagcacccaccctgacgatgaggacagtggcccttacaaacacatttca
cctggtgacaccaaggttatagtggagaatggtgaactgatcatgggcatcctgtgtaag
aagtccctgggaacctcagctggctctcttgtccacatctcctacctggagatgggccac
gacatcaccagacttttctactccaacattcagactgtggtcaacaactggctgctcatt
gagggtcattccattggtattggtgactccattgctgatgccaagacataccttgacatc
cagaatacaatcaagaaagccaaacaggatgtgatagaagtcatcgagaaggctcacaac
aacgagctggagcccactcctggtaacacactgaggcagacctttgagaatcaggtgaat
cgtatcctcaatgatgctcgtgacaaaacaggatcctctgcccagaaatctctgtcagag
tacaacaacttcaagtccatggtggtggctggatctaagggttcaaagattaacatctca
caagttattgctgtggtgggacagcagaacgtcgagggtaagcgaatcccctttggcttc
aaacaccgcaccctgcctcacttcattaaagatgactatggtcctgagagcagaggcttt
gtggagaactcctacctggctggcctgacaccaacagagttcttcttccacgccatggga
ggcagagagggtctgattgatacagctgtcaagacagctgagactggttacatccagcgt
cgtctgatcaaatctatggagtctgtgatggtgaagtacgatggcacagtgcgaaactcc
atcaaccaggtggtacagctgcgctatggtgaggatggcctggcaggagagaatgtagaa
ttccaaaatctggcaacattgaaaccctcacacaaggcctttgaaaagaagtttaagttt
gattgcaccaatgagcgagcactgaggcggatgctacaggaagacgttgtgaaagacgtg
ctgaccaatgcccatgtacaaagtagtttggagagggagtttgacaagatgaaggaggac
agggagatcctgcgagctattttccccactggagacagtaaggtggtgctgccatgcaac
ctggcaagaatgatctggaacgctcagaagatcttccgtatcaacactcgcaccccaaca
gacttgaaccctctaagggtggtcgaaggtgttcatgagctgagtaagaaacttgtcatt
gtgaatggtgacgaccctctaagcagacaggcccagcagaatgccactctgctctttaac
atccacctgcgctctacgctctgctccaaacgcatgaccgaggagttccgcctttccaca
gaggcttttgactggcttctgggagagattgagaccaagttcaaccagtccattgcccac
ccaggtgaaatggttggtgctctagctgctcagtcgctgggagagccagccacccagatg
accctgaacactttccattacgccggtgtgtcagccaagaacgtcacacttggtgtgccc
cgtttgaaggagttgatcaacatctcaaagaggcccaagacaccctcgttgactgtgttc
ctgctgggtcaggcagcacgtgacgccgagagggctaaggacatcctctgtcgactggag
cacaccactctgcgaaaagtgacagccaacaccgccatctactacgaccccaacccacag
aacactgtggtggccgaggaccaggagtgggtgaatgtctactatgagatgcccgacttt
gacgtaacacgcatttcaccatggcttctgcgcattgagctagaccgcaagcacatgacc
gatcgcaaattgactatggagcagatcgcggagaagatcaatgcaggttttggagatgac
ctgaactgtatcttcaatgacgacaatgccgagaagcttgtgttgcgaatcagaatcatg
aacagcgatgagaacaagttccaggaggatgaggaggtggtggacaaaatggacgacgat
gtgtttttgaggtgcatcgagtccaatatgctgacagacatgaccctacagggcattgag
cagatcagtaaggtgtacatgcacttgccccagactgacaataaaaagaagatcatcatc
acagaggatggcgagttcaaagcactgcaggagtggatccttgagacagatggagtaagc
ctcatgagagtcctcagcgagaaggatgtcgatcccgtcagaaccacctccaatgacatt
gtggagatcttcacggtcttgggaattgaggctgtgcgaaaggcactggagagggagtta
taccacgtcatctcctttgacggttcctatgtcaactaccgacatttggctctgctctgt
gacacaatgacctgccgtggccacttgatggccatcacacgtcatggcatcaaccgtcaa
gacacaggaccacttatgaagtgttcctttgaggagacggtggatgtgttgatggaggca
tcgtcccatggcgagagtgatcccatgaagggggtgtcagagaacatcatgctaggccag
ctcgccccagcagggacaggctgctttgacctgctgctggatgctgagaagtgtaaatac
ggcatggagatccctacaaacatacctggcatcagcgtggctggacccactggaatgttc
tttggcactgtgccgagtcccatgagtggtatgtcacccgccatgaccccttggaacaca
ggagctaccccggcctatggcgcctggtcccccagtgttggaagcggaatgacccctgga
gcagcaggtttctctcccagtgcagcatcagatgcaagtggcttctctccaggttactca
ccagcctggtctcccactcctgggtctccaggatctccaggacctgccagcccatacatc
ccatctccaggtggagccatgtcaccaaactactcacccacctcccccgcctacgagcct
cgttctccagggggctacaccccacagagcccgggctactccccgacatcaccctcctac
tccccgacttctccctcttactcgcccaccagccccaactacagcccgacatctccttcc
tactcccccacttcgcccagttactccccgacgtctccctcctattcgcccacatctcct
tcttactccccaacatctccctcctactccccgacctccccgtcttattctcccacctcc
ccctcatactctcccacctcgccgagctacagtccgacgtcgccaagctacagcccgaca
tcgcccagctattcacccacctcgccttcctactcgcccacctcaccttcttattctccc
acatctccatcctactctcccacctccccatcgtactcccccacctctccttcctactcg
ccgaccagcccaagctacagccccacgtcgccgaactatacccccacctcacccagttac
tcccctacctccccctcatactccccgacgtcaccctcttactccccaactntccccaac
tacaccccaaccagccccaactactcccccacctctccctcatactcccccacatctcca
tcctactccccctccagtccacgttataccccgcagtcacccacctatactcccagctcg
ccctcatacagccccagctccccatcctattcccccacttcacccaaatataccccaact
tcaccctcatacagccccagctccccagaatacacccccacctcgcccaaatactccccc
acctcgccaaagtattccccaacatcaccgaagtactcgcccacttctcccacctactct
cctacgactccaaaatacagccccacctctcccacctactcccccacctccccaacctac
accccaaccagccccaaatactctcctacctcccctacttactccccaacttcacccaag
tattcacccacgtctcctacatactcgccaactagtcctaagggctccacatacagcccc
acctcccccggatacagccccacctcacccacctacagcccggccatcagccccgatgac
agcgatgaggagaacaactaa
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integrated database retrieval system
