Amphiprion ocellaris (clown anemonefish): 111587720
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Entry
111587720 CDS
T06018
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X5
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111587720 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111587720 (cnot1)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111587720 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111587720 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
111587720
NCBI-ProteinID:
XP_023153576
Ensembl:
ENSAOCG00000002859
LinkDB
All DBs
Position
3:complement(32574802..32599233)
Genome browser
AA seq
2390 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMNPEVFC
FADFPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLTGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLASQLPGMD
SGPLGSGIGSGIGSSLGMPTVSTDPFGTRKMSTPGLNPTTFQQTDLSQVWPEANQHFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFP
QYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKN
RLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSLALAQV
QAQAQSQQPAGLKAPQPGQPSTLVTTTTTTTTVAKTTTITRPTPSSFKKDVPPSINTTNI
DTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLV
MKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNL
GHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQ
NPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSLEEQ
LSAPKKEAKPPEEMLPVSTTGDFVPFAAPPSTQAATTTTCTTTGPPTPQFSYHDINVYAL
AGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKD
FALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREM
MEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLT
YQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATD
DVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQKAV
EGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVE
AVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFH
TIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPP
GLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMC
VEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKV
LGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHIL
RPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNK
PMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPF
TPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEP
GNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLF
LNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITF
IELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctattacgctgtctcttctcccatgtagatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgctacgccattgacaatcctctgcac
taccagaagagtttaaagccatcggcccacttattcactcaactgagtaaagttcttaag
ctaagcaaggtccaagaggtgatatttggccttgctttgctcaactccagcaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttccagatctcctgcggtcatac
gttgacgcagatctcggaggaaaccaggaaggtggcttccaggacattgccatagaggtg
ttacacctactgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttccttaagacactttgccgagatttcccccaggaacgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacagaatccta
ccagactcgggggagttagctaagaccataatggagagttctcttgcagaattcattcaa
gaagttggctatggcttctgtgcaagtctggatgagtgcagaaacataatcctgcaatat
ggggtgagagaggtgacagccagccaggtagccagggtcctgggcatgatggctcgtaca
cactctggcctaaccgatggcattccgctacagtccatctccgctccaggaagtggaatc
tggagtgatggtaaggacaagaacgatggttcacaggcacatacgtggaatgttgaggtt
ctcatcgacattgtcaaagaagtgaatcccaacctaaacttcaaagaggtgacatacgaa
ctggaccacccaggctttataatccgggacagtaaaggcttgcacatagtggtgtatggt
atccagagggggcttggcatggaagtcttccctgttgatctcatctatcggccgtggaaa
cacgccgagggacagttgtcattcattcagcactcgctaatgaacccagaagtgttctgc
tttgctgacttcccctgtcacactgtggccattgacatccttaaggccccaccagaggat
gacaacagggagattgcaacatggaaaagtctggatctggtggagagcctgcttaggctg
tctgaggtgggccagtacgaacaggtgaagcagctgttcagcttcccaatcaagcactgc
ccagacatgttggtgctggcattactgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttttgggcaaccaccccaactcagccattatc
ctgcactatgcctggcatggacagggtcagtctccttccattcgtcagctaattatgcat
tctatggctgagtggtacatgagaggggagcagtatgaccaggccaagctatctcgcatc
ctggatgttgcccaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctcccgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaataagagaacatggggaacctttcattcaggcatgtgtgacattcctg
aagaggcgctgcccatccattatgggaggcctggcccctgacaaggaccagcccaaaagc
gcccagctgcccccagaaactttagccaccatgctggcctgcttgcaatcctgtgctggg
agtgtgtcccaggaattgtcagagacgatcctgaccatggttgccaattgcagcaatgta
atgaataaagcccggcagccaccccctggggttatgccaaagggacgcgccccgagcacc
agcagcctggatgccatctcacctgtacagatggacccattgactggcatgggttcctta
aaccttgggggcacagccacctcccacactcagagcatgcagggttttccaacctcactg
agttcagcttttagtaatccccagtccccagcaaaggccttcccaccactgtccaaccct
aaccccagcacaccttttgggggcattggcagcctcgcctcgcagctccctggtatggac
tctggtcccttgggctcaggcatcggctctggcattggctcaagcctggggatgccaaca
gtaagcactgacccttttggcaccaggaagatgagcacaccaggcctgaacccgacaacc
tttcagcagactgacctttctcaggtgtggcccgaggcaaaccagcactttagtaaggag
atagacgatgaagcaaatagttacttccagcgcatctacaaccacccacctcacccaacc
atgtctgtggatgaagtactggagatgctgcaaaggttcaaggactcaaccatcaagcgg
gagcgagaggtgttcaactgcatgcttcggaacttgtttgaggaatacagattcttcccc
caatacccagacaaggagctgcacatcactgcctgcctttttggtggcattatcgagaag
ggtcttgtcacctacatggccctgggcttggcccttcgatatgttcttgaagccttaaga
aaaccatacggatccaaaatgtattattttggaattgctgccctagataggttcaaaaac
agactaaaggactaccctcagtattgtcaacatctggcttcaattgctcacttcttgcaa
ttcccccaccatttacaagagtgtgtgcagtatatcgagtatggccaacagtcacgggac
cctccggtgaagatgcagggctccatcaccacacctggcagcctggcactggcacaagtt
caagcgcaggcccagtcacagcagccagctggcctcaaagccccgcagcctggtcagccc
agcaccctcgtcaccaccactacgactacaaccacagtagcgaagacaaccaccatcaca
agaccgacaccaagcagcttcaagaaggatgtacctccttccataaacactaccaacatc
gacactctgctagtggccactgaccaaactgaaaggattgtagagcctccagagaatgtc
caggagaagattgcttttatcttcaacaacctttctcagtccaacatgacacagaaggtt
gaggagttgaaagagacggtgaaagaggagttcatgccctgggtctctcagtacctggtg
atgaagcgtgttagcattgagcccaacttccacagtctctactctaactttttggacacg
ctcaaaaacccagagtttgtcaagatggttctcaatgaaacctacagaaatatcaaggtg
cttttgacctcagacaaggcagctgccaatttctctgatcgctccctgctgaagaacctg
ggccactggctgggcatgattacactggccaaaaacaagcctatcctttatacagatctg
gaagtcaagtctctgctactggaagcctatgtgaaaggccagcaggagctactttatgtg
gttccctttgtggccaaagttttggagtctagtctgcgtagcatggtttttaggccccag
aatccttggaccatggccatcatgaatgttcttgctgagctgcatcaagaacatgacctc
aagctgaatttaaagtttgagattgaagttctatgtaagaacttgtctctggacatcaat
gatctgaagccaggaaacctgctgaaggacaaagagaagctgaagagcctggaggagcag
ctgtctgcaccaaagaaagaggcaaagcctccagaggagatgctgccagtctctaccaca
ggagactttgttccatttgcagctcctccctcaacccaagctgccaccactaccacttgc
acaaccaccgggcctcccactccacagttcagttaccacgacatcaatgtgtatgccttg
gcaggcctggcaccacacatcaatataaatgtcaatatcccactgctacaggctcatcct
cagctgaagcaatgtgtgcggcaatcggtggagcgggcagttcaggagcttgtgcaccct
gtggtggatcggtctatcaaaattgcaatgacaacttgtgaacagatcatcaggaaggac
tttgccctggattcggaggagtcccgcatgcgtgtggctgcccaccacatgatgagaaac
ctcactgctggcatggccatgatcacttgccgcgagccactgctcatgagcattgccacc
aaccttaagaacagctttgctgctgcacttagggcaccaacaccccagcagagggaaatg
atggaagaggctgcagctaggattgctcaagacaactgtgaattggcttgctgcttcatt
cagaaaactgctgttgagaaggctggccctgaaatggacaaaagactagccacggagttt
gagctgaggaagcacgcacggcaagaaggacgtcgctattgtgatcctgttgttctgact
taccaggctgagcgtatgccagagcagatcagactcaaggtgggaggagtggaccctaag
cagctggctgtatatgaggagtttgccagaaatgttccaggtttcttaccaagtaacgat
ctctcccagccaactggcttcttggcgcaacccatgaagcaacaggcatgggcaacagat
gatgtcgctcagatctacgataaatgcatggcggacctggagcagcatcttcatgccatc
cctccggccctcgccatgaatcctttgactcaagccctacggagcctgctggaagctgtg
gctttggccaggaactccagagatggcatcgctgcacttggtctactgcagaaggcggtg
gaaggtcttctggatgccactagtggggctgatgctgacttgctgcttcgctacagagag
tgccacctgttggtgcttaaagccctgcaggatggacgtgcttatggaccacagtggtgc
aataagcagattaccaggtgtctgattgaatgccgtgatgaatacaaatacaacgtagaa
gcagtggagcttctgatcaggaaccatcttgtgaatatgcagcagtatgacctgcaccta
gcacagtcaatggagaatggattgcactacatggcagttgcgtttgccatgcagttagtg
aagctgctgctggtagatgaacgcagcgtgagccatgtcacagaagctgacctcttccac
acaattgagactttaatgaggacctgtgcacactccagagccaacgcacctgaggggctg
ccacaactgatggatgttgttcgctccaactacgaagccatgattgaccgggcccacggt
ggccccaacttcatgatgcactctgggatttcgcaggcttcagaatatgatgatcctccc
ggtctgagggagaaggcggaatacctcctaagggaatgggtcaacctgtatcactcagct
gctgcaggcagggatagcaccaaagcattctctgccttcgttggccagatgcaccagcag
ggcatcctgaagacagatgacctgatcacacggttcttccggctgtgcacagaaatgtgt
gtggagatcagctatcgggcacaagcggaacagcagcacaacccagcagccagtgcagcc
atcatcagagccaagtgttaccacaacctggatgcctttgtgaggctcattgccctgctg
gtgaagcactctggggaggccaccaacacggtgacaaaaattaacctccttaacaaggtg
cttggtattgtagttggcgtgttgatccaggaccatgatgttcgtcagacagagttccag
cagctgccataccatcgcatcttcatcatgctgctgttggagctcaatgcccctgaacat
gtcctggagaccattaacttccagacactcactgccttctgcaacacctttcacattctg
agacccaccaaagcacctggcttcgtgtacgcctggttggaactcatctcccatcgcatc
ttcattgccaggatgcttgcgcacacaccacagcagaagggctggcccatgtacgcacag
ctgctgattgatctcttcaagtacctggccccattcctgaggaatgtagagctcaacaaa
cctatgcaaatcctctacaagggcacactgcgagtgctcctggtcctgctgcacgacttc
ccagagttcctgtgtgattaccattacggcttctgtgacgttatcccacccaactgcatc
cagctccgcaacctcatcctcagtgccttcccacgcaacatgaggcttcctgaccctttc
acacccaacctaaaggtggacatgctgagcgagatcaacattgctccccgtatcctcacc
aacttcacaggcgtgatgccttcacagttcaagaaggatctggattcgtatctgaagaca
cgctcacctgtcaccttcctatcagagctgcgcagcaacctgcaggtgtctaacgagcca
ggaaaccgctacaacatccagctgatcaacgctctggtgttgtacgtaggcacacaggca
atcgctcacatccacaacaagggcagcaccccgtccatgagcaccatcacccactctgca
cacatggacatcttccagaacctggctgtggacctggacactgaggggcggtacttgttt
ttgaacgcgattgccaatcagctgcgctaccccaacagccacactcactacttcagctgc
accatgctctatctgttcgctgaggccaacactgaggccatccaggagcagatcaccagg
gtcctgttggaaaggctgattgtgaacaggcctcacccatggggtctcctcatcaccttc
atcgagctgatcaagaatcccgccttcaagttctggagccacgactttgtgcactgtgcc
cctgagattgaaaagctcttccagtcggttgcccagtgctgtatgggacagaagcaggcc
cagcaggtgatggagggcaccggggccagctag
DBGET
integrated database retrieval system
