Amphiprion ocellaris (clown anemonefish): 111588579
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Entry
111588579 CDS
T06018
Name
(RefSeq) collagen alpha-2(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111588579
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111588579
09142 Cell motility
04820 Cytoskeleton in muscle cells
111588579
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111588579
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111588579
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111588579
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111588579
Hyaluronan
Extracellular matrix or blood plasma proteins
111588579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
111588579
NCBI-ProteinID:
XP_023154792
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MAIIPALIFLCVLQAAVPQVPPPRGPRPIPGRGDSPEPTVPPLQPLPTPRPEGCEPKIID
CPIKLLFTIDTSETIALQEIPPGSLVDSIKEFTKVFVQKLEHQEYRGQIDISWSIGGLHF
SQTQVVFSQFTTKENFIRSLQDIEYLGKGTYIDCALKNMTHLMTQHNTGTKAVLFSVFIT
DGHVTGNPCGGIKMMAEKAREKGIQIFSVAATRVIDDLGMREIASSPHELFRDDYIVVEL
GDNNLNISTSSIDRIIKAMKYQAYLQCYKPACLEVDGNRGPKGSPGQKGIKGDRGNKGTK
GEKGKQGDPGIEGPIGRPGPKGETGYRGDKGEIGLSGARGVKGSPGKNGTDGQKGKIGRI
GAAGCKGDPGDKGPDGYPGLVGESGQQGDDGEKGDPGIPGRSGPPGPLGEPGPQGEIGNP
GNPGTPGQRGNPGPKGLPGPKGAEGRRGDPGTKGGPGLNGPKGIKGERGPLGGRGRPGED
GFKGSKGDQGLPGPRGPPGEPGAPGDNGSVGDPGDPGPRGDSGPPGPLGDKGRAGFNYPG
PRGPTGDRGEPGRRGPRGGRGECGAKGEIGNKGTTGDRGKPGQPGEPGLRGPRGDPGLKG
GPGSVGDPGLTDCDVMTYVRETCGCCDCEKHCGALDIIFVIDSSESIGESNFTLEKHFVV
NTVNRLGSMASDPASPTGTRVGVVQFSHLGTFEAIHLNDSTINSLSAFKTAVKNLKWIAG
GTYTPSAIKFTYDTFIKASRRAGASANVVVVTDGRYDPNDDDSKLRYLCDPNVVVNAIGV
GDMFHQIHDNENLLSIACHNKNRTTTMRRYTDLVADDFMEKMETVLCPNPEIKCPDLPCK
NGPDVAPCVGRPVDLVFLLDGSERLGTENFRYVGEFVQKVADRLELARSRSDRMRARLAL
TEFGKENENQVAFTLTHDPVIIANGIRAFPYLDSSSSVGPAIFHTIDNILGRGNTRQTRR
HAELSFVFITDGITDSNNLDEAVSAMRGQQVVSTVIATGSDVDQDVLMKLAMEDQDAIFK
IQKLTDLLDSRFFDRFIRWVC
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcaataattccagcactcatctttctgtgcgtgctccaagctgcagtccctcaagtc
ccgccaccgcgtggacccagaccaatacctggccgaggggacagtccagaaccaactgta
cctccactccaaccactgcccacaccgagacctgagggctgtgagcccaagataatcgac
tgtcccatcaagctgcttttcaccatcgacacctcagagaccatcgccttgcaggagatt
cctcccggcagcctggtggacagcatcaaggaattcacaaaggtctttgtccagaagctc
gaacatcaggagtacaggggccagatcgacatctcttggtccataggaggccttcacttc
tcccagacgcaggtggtcttcagccagttcaccaccaaagagaacttcatcaggagtctg
caagacatcgaatacctgggcaagggcacctacatcgactgcgccctcaaaaacatgact
cacctgatgacccagcacaacacagggaccaaggccgtcctcttctcggtgttcatcact
gatggccacgtgacaggaaatccatgcggtgggatcaagatgatggcggagaaggcccgg
gagaaaggcatccagatattctcagtggcagcgaccagggtcatcgatgacctggggatg
agagagatagccagctctccccacgaactgttccgagacgactatatagtggtggagctg
ggggacaacaacctaaacataagcacttcatccattgatcggatcataaaagccatgaaa
tatcaagcatatttacagtgttataaaccggcctgcttggaggttgatgggaaccgtgga
ccaaaagggtctccaggtcaaaaaggcataaaaggagacagaggcaataaaggaacaaag
ggtgaaaagggtaaacagggtgatcccggtattgaaggtccaattggacgccccggtcca
aagggagagactggttatagaggtgacaagggtgaaatcggattaagtggagcaaggggt
gtgaaaggttcacctggcaagaacggaactgacggacaaaagggaaaaatcggccgcatt
ggagctgctggttgcaaaggtgatccaggtgacaagggaccagacggctaccctggtcta
gttggtgaatctgggcaacaaggggacgatggggaaaagggtgacccaggcatccctggg
aggtcaggccccccaggccctctgggtgagccaggaccacagggcgaaattggaaatcct
ggaaatccggggacaccagggcaacgggggaatccggggcctaaaggattacctggaccg
aaaggcgcagaggggaggagaggagaccctggaacaaaggggggacctggacttaacggg
ccaaagggaataaagggagaacgagggccactgggaggcagaggtcggccaggggaagac
ggattcaaaggctcgaagggagaccaaggattaccaggaccgaggggtccaccaggagaa
ccaggggcccctggagataatggaagtgtgggagatcctggagatcctggacctagagga
gactctgggccgccgggaccacttggtgacaaaggaagagcaggattcaactacccagga
ccaagaggaccaactggagacagaggtgaaccgggcaggagaggacccagaggaggcaga
ggtgaatgtggggcaaaaggagaaattgggaataaaggaacgacaggagaccgcgggaaa
ccaggacagccgggggagccaggactcagaggacccagaggagaccctggacttaaaggg
ggtccgggatctgtgggcgatcctggcctcactgactgtgacgtcatgacttacgtcagg
gagacgtgtggttgttgtgactgtgagaagcactgtggagctctggacattatatttgta
atcgacagctcagagagtatcggagaaagtaatttcaccctggagaagcactttgttgtc
aacaccgtcaacagactgggatctatggcctctgaccctgcgtcaccaactggcacaaga
gtgggagttgtacaattcagccacttagggacctttgaagctatccatctcaatgactca
accataaactctttgtctgcctttaaaacggcagtgaagaacctaaagtggattgctggg
ggcacttacacaccgtcagctatcaagttcacctatgataccttcatcaaggccagcagg
agggcaggagcaagcgcaaatgtggtcgtggtcacagacggccgctatgaccctaacgat
gacgacagcaaactccggtacctttgcgaccccaatgtggttgtcaatgccattggggtt
ggcgacatgtttcaccagatacacgataacgagaatctgctgtctatagcatgccacaat
aaaaaccgaaccactacaatgaggcgttacactgacttggtagctgacgacttcatggaa
aagatggaaactgtgctgtgtcccaatccagaaattaagtgccctgatctcccctgtaaa
aatggccctgatgtagctccatgtgtcgggcgtccagtggatttggtgtttctattagat
ggctcagagcgcctcggcacggagaacttccgctatgttggagaatttgtgcagaaggtg
gcagacagactggaactggccaggagcaggtctgatcgaatgcgagcccgtctggcactg
acagagtttggcaaggaaaacgagaatcaggtggccttcacgctcacacatgacccggtc
atcattgctaacggtataagagccttcccttatctggactcttcctcaagcgtggggccc
gccatcttccacaccatcgacaacatcttgggtagaggaaacactcgccaaacgagacgc
cacgcagagctttcatttgttttcatcacagatggcatcacagatagcaacaacctggac
gaggcggttagtgccatgcgagggcagcaggtcgtctccacggtgattgctacaggaagt
gacgttgatcaagatgtcctaatgaagctggcaatggaggaccaggacgccattttcaaa
atacaaaaattaactgatctgcttgactccaggttctttgaccgtttcatccggtgggtg
tgttaa
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