Asparagus officinalis (garden asparagus): 109824557
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Entry
109824557 CDS
T05243
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109824557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109824557
Enzymes [BR:
aof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109824557
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109824557
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
DrmE_C
Motif
Other DBs
NCBI-GeneID:
109824557
NCBI-ProteinID:
XP_020246771
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Position
9:48584231..48595487
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AA seq
606 aa
AA seq
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MEATIAAAQRQGYTSAVKQVMKTNFTSALEEIKAHINQSDFIAVSSQKTGDFFSSSSSWR
RVLPIDTPEVAYLKSKVSADNFQLFQFAVCPFSIQGSKVLASPYNFHLFPRDELGLGMPS
YSFSCQTSFLTSMAQEGFDFNACIYDGISYLSRVQESKAKERNPVPRMHPISSSFNPSVA
DSLFMGRIKSRIEHWRSACKNKDSVADGSLVKSLRKLILGDELYGSRPCMNIEVCSDRQV
QLTLEIVNKIGDDLVPLVVPEKCGAPKAVRVVLTSSDEDKILLMSDIENVEDEQNLKVRG
FREVIDLVSRSQKPIIAYNCLHDFTFIHSKFLAPLPPSLSEFMCSLRLVFPNILDVNHLC
KEVGPLRKAKNLPATLSYLKRQFFVPIEFEIPHQADVKTEKDHGHNVLRITTLFSKLYNL
LKLSSERQEPYEEQHRSIEDYTNIFHPTYTSFQESGDNENVILSMNKNRRKVSTDNIVFL
WGFGDRISASELKSHLKGIHPVFSEDFDLRLVDKACSVIVFWSSGAAQALLKVMESGEMI
SIDLKLAGYEAYKKVCKSGLWEAGLANSLEAALAETELECDLSASSAKDSSDIYWNSELM
IDLDNL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacgatcgccgcagctcaacggcaaggctacacctcagcagtgaagcaagtg
atgaagacgaacttcacctcggcgcttgaagagataaaggcccatatcaatcagtccgat
ttcatcgccgtctcctctcaaaaaactggcgatttcttctcttcttcatcttcatggcgg
cgcgtgcttcctattgatactcctgaagttgcgtatctcaagtctaaggtgtccgctgat
aatttccagcttttccagtttgcagtctgccctttttccattcaggggtctaaagtcctc
gcctccccctacaactttcatttatttccaagggatgagctaggtttgggcatgccttcc
tatagcttctcgtgccaaacttcattcctgacttccatggctcaagaaggttttgacttt
aatgcatgcatttatgatggaatatcatatttgtctagagtacaagaatcaaaagcaaaa
gagagaaatcctgttcctcgaatgcatccaatttcatcctcctttaatccatcggttgct
gattcgcttttcatgggaagaatcaagtcaagaattgagcactggagaagcgcctgcaaa
aacaaagacagtgttgctgatggttctcttgtaaaatctttgagaaaactaattttaggc
gatgaactctatggttcaagaccatgcatgaatatcgaggtctgcagtgatcgtcaagtg
cagttgacactagagatagttaacaagataggtgatgaccttgtgcctttagttgttcca
gagaaatgtggagcgcccaaggcagtacgtgtggtgctgactagttcagatgaggacaaa
attcttctcatgagtgatattgaaaatgttgaagatgagcagaacctaaaggttcgtggg
ttccgagaagtgatagacctggtttccagatctcagaaaccaatcattgcatacaactgt
ctgcatgattttacatttatccactcgaaattccttgctcccctgccaccaagcctgtcg
gaattcatgtgctctttgagattggtcttccctaatatactcgatgtgaaccatctatgc
aaagaagttgggcctttgagaaaagcaaagaatctgccagctactcttagttacttgaag
aggcagttctttgtgcccatagaatttgaaatccctcatcaagctgatgtgaaaactgag
aaagatcacggacacaatgtcctcagaattacaaccttattttccaagctctacaatttg
ctaaaattatcttctgagcgtcaagagccatatgaagagcagcataggtcaattgaagat
tacacaaatatctttcatcctacttacactagtttccaagagtctggggacaatgagaat
gtcattctctcaatgaataaaaacaggaggaaagtgagcaccgataacatagttttcttg
tggggttttggcgatagaattagtgcttctgagttaaaatcccacctcaagggaatccat
cctgtgttctctgaagactttgacttgcgacttgtagataaagcatgttcagttattgtt
ttttggagctcaggtgctgctcaagctttactcaaagtgatggaatcaggagaaatgatc
tccattgatctaaaattagcaggatacgaagcttacaagaaagtttgcaagtcggggctt
tgggaggcaggcttggccaattctttggaggctgccttggctgagactgaacttgagtgt
gatctttctgcatcttctgccaaggattcctcggatatctattggaacagtgaactgatg
attgatcttgataatctttga
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