Asparagus officinalis (garden asparagus): 109830617
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Entry
109830617 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109830617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109830617
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109830617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_16
TPR_11
TPR_CcmH_CycH
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
109830617
NCBI-ProteinID:
XP_020253519
LinkDB
All DBs
Position
2:30841102..30869972
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AA seq
998 aa
AA seq
DB search
MFTAAIKSYGRAIELEDSKVFSLIESGNILLMLGSFRKGIEQFRSALKIAPQNASAHFGL
ASGLLGLSKECASSGAFGWGASLLEEASEVVKAGTHLCGNVYSAWKLHGDIQSAYAKCFP
WDDKRTCDEINEGSFKISINNWKKTCLFAANDAKRSYQRALHLAPWHANIYTDVAITLDL
IDSSEEKETPETDVWQIPERMSMGSLLLEGVNCESWVILSCLSKDPALKQHALIRGLQLD
ASLSIAWAYLGKMYRNLGERQLAGQAFDRARSIDPSLALPWAGMSADFHEGTLSTSEAYE
SCLRAAQILPVAEFQMGLGKLAVLSGHLLSPQVFGAIRQAVQRAPCCPESHNLNGLVCEA
RSDYQSAIAAYRLAQCALKIGCYSKDVLRCHQADVSINLARALCQADYAMDAARECEHLE
KDDLLDSSALQIYAVALWKLGNRDLAFTLAKKMAKIVSTMKPRCAVAALGLVCSLVYCIS
GLNPSATFLQKIPTEFLHSTKMSFIVATINALDQSSRLEMLLQSSLQTFASHESVAELHS
IICMSKIQMGHGSEQNLEIHRGVDYLKKVLHMYPDSNLIRNYLSSLLLSTGDWMASHKAT
ECTVIPSGYPVKTGLKSPFEINGIAGVACYSSCVTSPKLSFPTCKDQLMFGSLRVHQLQK
WLHQEPWSGEAHYLLLLNVLQKAREEKFPQNLCVTLKRLVSVAISRDTCNDNDLCKHLKF
LTLLSASELSLQCGDYLGCGSLADNALEVLPPHGDPFFAHLQLCRAYVAQGDMEKVKDEY
LNCLRVKTAHPIGWIILKYFESKFKLQKDSNMIDINFRSNLYGSQCSRNMWTAIFNLVSG
QSYIWDQDFHSAEKALALACSFRDVDSCLLLCHGAICMELARQRAGSEFLQHAVTSLKKA
QETSPFPLPIVSALLAQAEASLGARAKWEKNLRFEWFSWPPEMRPAELYFQMHLLSNSGP
KQQHNIELSQSPRTWILRAIHLNPSCSRYWKVLEKIES
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgtttacagcagcgataaagtcatatggtcgggcgattgaattggaggactcaaaagta
ttttcactgattgaaagtgggaacattcttctaatgctaggatctttccggaaaggaatc
gagcagtttcgtagtgctttgaaaatagccccgcagaatgcatctgcacactttggactt
gcatcaggtcttcttggattgtcaaaagaatgtgcaagttctggagcatttggttgggga
gcttctctcttggaggaagcatcagaggttgtgaaagctggaacacatctatgtggaaat
gtttattctgcttggaagttgcatggggacatccagagtgcatatgcaaaatgctttcca
tgggatgataaaaggacctgtgatgaaattaatgagggtagtttcaagatttccatcaat
aactggaagaagacatgccttttcgctgcaaatgatgctaagcgctcatatcagcgagct
ttacacttggcaccgtggcatgcaaacatctataccgatgttgctatcaccttggatctt
atagattcttcagaggagaaagagacgccagaaactgatgtttggcagataccagagagg
atgtccatgggaagcttactgcttgaaggagtgaactgtgagtcatgggtcatattgagt
tgcttgtccaaagatcctgcattgaaacaacatgctttgattaggggcttgcagctggat
gcatctctatctatcgcatgggcatatcttggcaagatgtacagaaatttaggtgaaagg
cagttggctgggcaagcatttgatcgtgctagaagcatagatccctcactagcattacct
tgggccggaatgtcagcagattttcatgaagggacattgtcaacaagtgaggcctatgaa
agctgcctgagggccgcacagatacttcctgtggctgaattccaaatgggcctcggaaag
ctggctgttctttctggtcacctactatctccacaggtatttggagccataagacaggct
gttcagcgtgcaccttgttgtccagagtcgcataatctaaatggtctggtatgtgaggca
cgttcagattatcagtctgcaatagctgcgtatcggctggcacaatgtgctttaaaaatt
ggttgctactccaaggacgttctcaggtgtcatcaagcagatgtttcaatcaatcttgcc
agagcactttgccaggcagattatgcaatggacgctgcacgtgagtgtgagcatttggag
aaagatgatctgcttgatagcagtgccttgcaaatatatgctgttgcattgtggaaactt
ggaaatagagacttggctttcactttggcaaaaaaaatggccaagattgtgtccaccatg
aagccgagatgtgcagttgctgctctaggattggtatgctcattagtatactgtatttca
ggactgaatccttcagcaacatttcttcaaaagattccgacagaatttttacatagcaca
aaaatgagtttcatagttgccacgatcaatgctttggatcaaagcagtcggcttgaaatg
cttctccaaagtagtcttcaaacttttgcttctcacgagtctgtcgctgaattacattcc
ataatttgtatgagtaaaattcagatgggtcatggatcagaacaaaaccttgaaattcac
aggggagtagactacctgaagaaagtccttcacatgtatcctgacagcaacttaataaga
aactacctcagttctcttttattgtctactggagattggatggcttctcacaaagcaact
gaatgcactgttataccctctggttaccctgtaaagacgggtttaaaatcaccattcgag
attaatgggattgcaggagttgcttgctattctagttgtgtcaccagtccaaagttgtca
tttccaacttgcaaagatcagcttatgtttggttctttacgagtgcatcagttgcagaaa
tggttgcatcaggaaccatggagtggtgaagcgcattacctacttctattaaatgttcta
cagaaggcccgtgaagagaagtttcctcaaaacttatgtgttactttaaagcgtttggtg
tctgttgctatttccagagacacatgtaatgataatgacctatgcaaacacttaaagttt
cttactctactaagtgcttcagaactaagtttgcaatgtggagactatcttggttgcggg
agccttgctgataatgcattagaagttctacctcctcacggtgatcctttctttgctcac
ttgcaactctgtcgtgcctatgtagctcaaggggatatggaaaaagttaaggatgagtat
ttgaattgcttgcgtgttaagacagctcatccgattggttggattatcctaaaatatttt
gaatctaagttcaagctgcagaaagattctaacatgattgatattaattttcgaagtaat
ttatatggaagtcaatgctcccggaatatgtggacagctatcttcaatttggtttctggc
cagtcctatatatgggatcaggactttcatagtgcggaaaaagctttagcgcttgcgtgt
tcgttcagagatgtggacagttgccttttactctgtcatggtgcaatttgtatggagctt
gctaggcagcgggcaggttctgagtttttacagcatgcggtaaccagccttaaaaaggct
caggagacttcaccttttcctttgcctattgtttcggcattattggctcaagcagaggca
agcttaggtgcaagagccaagtgggagaagaacctccgttttgaatggttctcttggccg
cctgaaatgaggcctgctgaactgtatttccaaatgcacttgctttccaattctgggcct
aagcaacagcacaacatagaactatctcagagccctcggacatggattcttagggccatt
catttgaatccgtcatgttcaaggtactggaaggtcttagagaagattgaatcctaa
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