Asparagus officinalis (garden asparagus): 109839113
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Entry
109839113 CDS
T05243
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109839113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109839113
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109839113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
nSTAND3
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
109839113
NCBI-ProteinID:
XP_020263134
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All DBs
Position
4:complement(104673463..104687222)
Genome browser
AA seq
1338 aa
AA seq
DB search
MDNTNDSQSSGNSIKDAGGSKYMDLEELLDGGGGQGGTVLVLIEKRRRLQIAENQSAMRR
LCKLVNLSSGSMQYKKRWILSTRTRKQPVSFVEEGKEEMTVFVIEDDSDDEDDDTEEEGG
GGGDVEVRHRVNVRNQWPSELQKDRQSNGDSSSGTSSASGSESSIRFASDQETGSDSIEI
SEKEWDEECGYRSSPEPSARLVELDSSDDEEGETSNCCSLIERSKYLEIPQGVRVKEEEE
EDEEDEEEEEEVDENEVKPMAKLLPFCVARRTRAQNGKINRVSYSEYFMEKFSDDSEDGE
DTEDEGSQKDESYNYAEKSESVSVLGGSSEDNEVFVKKKKLGIDILVSVSNEGGDSEGVN
SSSRSDIVSQRTRSRFNSVADPKMKKMGTVRNPVCLEVDELQSEEDEMEDDSVGMDLDRG
KGKWVCNINKGGSGMNTKVSNGVRDGNRTKMQDTDISKDLVERKRMWVDSDTEDGGRMGT
QVSNMMESGSREGSNGIKLNVDAREKNETDGVPASTSKKRKRVRPPNANELFKILANNIF
NEEGTTLEDLFKRESPVEDNSAACPENLLPLVFSFGDDDAKPVDKSEHEKELDDLWADFD
FTTEANNIGVYHDDEDHIQETNVTEVESDPSALCMKGKHHYVLDEEIGIRCKFCSFVKLD
IKHIFPSWASSQFGERLTRSNTVKNKEVPLFFNDLFSEGKDGSCQGSHGYSTGTVWDLTP
GLQGSMFLHQREAFEFMWRNLGGSISLDDLKSGVGSDDTGGCVISHAPGTGKTRLAIMFI
QSYMKLFPECRPVIIAHRGLLETWKNEFKKWKVSLAIHDLNAEKYSGQEDVMALELVRKA
NKQDTTLMRLVKMYSWYKGESVILVSYTLFSTTYSDNDMRGSMLKKILLEKPGLIIFDEG
HTPRNERSRIWEALEQIKTSKRIILSGTPFQNNFTELYNTLCLVRPKFAEKISFGTSKLK
RPELFATTEEKVLEKRNKAKTNWDHLVQRVIDSKELKSGIKNVKSVIRHFVHVHSGKILD
TLPGLRKCTIVLNPLPYQKSILDIIQQSKDGSFVNKDYRKTLISIHPSLAMHCLYENEKP
LMDTPLLAKVRLNPSEGVKTKFVIELIRLCEALKEKVLVFCQFIEPLDIIRDQLFKLFDW
TEGKEVLKMHGKLTSKTRQSLIDTFNDLSSEARVLLASTKACSEGISLVGASRVVLIDVL
WNPSTEHQAISRAYRIGQHKFVYVYQLVTLGSGESDKCCVQATKDKMSKLVFSPEIDLNN
IEESSSLAEEEYTSKMVAKDRILTEMTEHDNLRDIFKKISYLPKESKNVSLFTEEDINDV
NNGHVDATAADVDTAPHF
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggacaatactaatgatagccaaagcagtgggaacagcattaaggatgcaggtggatcc
aagtacatggatttagaggaacttctagatggggggggggggcagggggggacagtgtta
gttctgatcgaaaaacggagaagactccagatagcggagaaccagagtgctatgaggaga
ctatgtaagttagtgaatctcagcagtgggagcatgcaatacaaaaagagatggattctc
tccactcgaacgaggaagcaacctgttagctttgtagaagaaggaaaagaagagatgacc
gtatttgtcattgaagatgacagcgatgatgaagatgacgacacggaagaagaaggagga
ggaggaggagatgtggaggtgcggcatcgtgttaacgtgaggaaccaatggccgtcggag
cttcagaaggatagacagagcaatggggactcaagttcaggaacaagctcagcatccggg
tcagagtcttcgatcagatttgcttcagatcaggaaacgggttcagattctatcgaaatt
tcggaaaaggaatgggatgaagaatgcgggtataggagcagcccagagccttcagctagg
ttagttgaacttgattccagtgacgatgaggagggggaaacctccaactgttgcagtttg
attgagagatcaaaatatttggagattcctcagggggttagagtaaaggaagaggaggag
gaggatgaggaggatgaggaggaggaggaggaggttgacgagaatgaagtgaaaccaatg
gcaaagctccttcctttttgcgtggcgagaaggaccagagcccaaaatgggaagataaat
agggtttcgtattctgagtatttcatggagaagttctcggatgattcggaggatggagag
gacactgaggatgaagggagccaaaaggacgagtcatacaattatgccgagaagtcagaa
tcggttagtgtattgggaggaagtagtgaagacaatgaggtcttcgtgaagaagaagaag
ttgggtattgatattctagtgtctgtcagcaatgagggaggcgatagcgagggtgtgaat
agtagtagcaggagtgacatagtttctcagaggacccgttcaaggtttaattcggttgca
gatccgaaaatgaagaagatgggcacggtgagaaatccggtttgtttggaagtggatgag
ttacagagtgaggaggatgagatggaagatgatagcgttgggatggatttagatagagga
aaagggaagtgggtttgtaatataaacaaaggaggtagtgggatgaataccaaagtcagt
aatggtgtcagagatggaaacagaacgaaaatgcaagatactgacatttccaaggattta
gttgaacgaaaaaggatgtgggttgacagtgatactgaagatggtggcaggatgggaacc
caggttagcaatatgatggagagcggaagtagggagggtagcaatggcatcaaattgaat
gtggatgcaagagaaaagaatgaaacagatggagtcccagcaagcacatccaagaagagg
aagcgtgttcgaccaccaaacgcaaatgagctcttcaagattcttgcaaataatattttc
aatgaagagggcacaactctggaggacttgtttaaacgagagtctcccgtggaagacaac
agcgcagcctgcccagagaatttgcttcccttagtattttcatttggagatgacgatgca
aaaccagttgataagtcagagcatgagaaagaacttgatgatttgtgggccgattttgac
tttactacggaagcaaataacataggtgtctatcatgatgatgaggatcatattcaagag
actaatgttaccgaagttgaatctgacccatctgctctctgcatgaaggggaagcatcat
tatgtgcttgatgaggaaattggcatcagatgcaaattctgctcgtttgtgaaattggat
atcaaacatatatttccatcatgggcatcttctcagtttggggagaggttaactcggagt
aacactgttaaaaacaaagaggtccccttatttttcaatgatcttttcagtgaaggaaaa
gatggtagttgccaaggttcccatggttattcaacagggactgtctgggatctcactcct
ggactccaggggagtatgtttctgcatcaacgggaagcattcgaatttatgtggagaaac
ctcggaggaagcatttcccttgatgacttaaaatcaggcgttggctctgatgatactggt
ggctgtgttatttcacatgccccaggcactggaaagacaagattagcaattatgttcatc
caatcttacatgaagctctttccagagtgcagaccggtaattattgctcatcgtggactg
ctggagacatggaagaacgaatttaagaagtggaaggttagtcttgctatccatgatttg
aatgctgaaaagtactcaggtcaggaagatgtcatggcccttgaactggtaagaaaagca
aataagcaagatacaacgttgatgcgcttagtcaagatgtattcatggtacaaaggagaa
agcgttatattggtcagttataccttgttttcaactacatacagtgataacgatatgaga
ggttcaatgttgaagaagatcctccttgagaagccaggtttaatcatttttgatgagggc
cacacacccaggaacgaacgcagtcgcatttgggaagcacttgaacaaattaaaacttct
aaacgaatcatcctttctggaaccccttttcaaaataactttacagagctttacaataca
ctctgtctggttagacctaagtttgccgaaaaaatttcattcggaacttcaaagctgaaa
agaccagaattgtttgctacaactgaagaaaaggttctagaaaaaaggaacaaggccaaa
acgaattgggatcatcttgtacaaagggttattgatagtaaagagcttaaatctggtata
aaaaacgttaaatcagtcatcagacattttgtccatgtacacagcggtaaaatccttgac
actcttcctggtttaagaaagtgtacaattgtcctaaatcctctcccctaccagaagagc
attcttgatataattcaacagtccaaggatggtagtttcgttaacaaggactacagaaag
acattgatttcaatacacccttctctggcgatgcattgcttatatgagaatgagaaacct
ctaatggacactcctctcctagcgaaagtgagattaaatccttctgaaggggtgaaaacc
aaatttgttatagaactaattcgattatgtgaagcattaaaggagaaggttctagtgttc
tgtcagtttattgagccactggatataataagagatcagcttttcaagttatttgattgg
actgaaggaaaggaggtgttaaagatgcacgggaagctcacttcaaagactcgccagtct
ctaatagatactttcaatgacttgtcaagcgaagcaagggtcttattggcgtcaactaaa
gcatgctctgaaggaataagccttgttggtgcttcaagggtggttctaattgacgttctt
tggaacccgtctacagaacatcaagcaataagccgagcatacagaattggccagcacaaa
tttgtctatgtttatcaattggtcacattgggaagtggggagagtgataaatgttgtgta
caagctacaaaggacaaaatgtctaaattggttttctctcctgaaattgacctgaataat
attgaagaaagttcgtcacttgctgaagaagaatatacttccaaaatggttgctaaagac
agaatattgacagagatgacagagcatgacaacctcagagatatctttaaaaagatttca
tacctgccaaaagagtcaaagaatgtgagtttgtttactgaagaggatataaacgacgtt
aacaatggacatgttgatgctactgctgcagatgttgatacagctccgcacttctga
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