Asparagus officinalis (garden asparagus): 109847365
Help
Entry
109847365 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof00040
Pentose and glucuronate interconversions
aof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109847365
Enzymes [BR:
aof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109847365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
109847365
NCBI-ProteinID:
XP_020272185
LinkDB
All DBs
Position
7:74207677..74211242
Genome browser
AA seq
269 aa
AA seq
DB search
MQIRLERPLVVGSFTTIDGRGADVHIANGAGFLIEHAHDIIIHGLQFHKPRPNAPGPVLG
PAAKVEPTGAGDADAFPIVYSFKIWLDQSLYSCHDGLLDVTRGSTGITVSNNWFRDHDKV
MLLGHDDGFVRDKDMKVTVAFNRFGPNCIQRMPRIRHGYAHVVNNFYDGWRDYAMGGSMN
PTIKSQGNLYVAVGNKEVIWKEDGPGRGTSWNLKSVNDAFINGASFRQVGSAGVSPHYKP
DEAFAAGNPDQVHALTRDAGALRCHANGC
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaggctcgaaaggcctttggttgtggggagttttactactattgatgggaga
ggagccgatgtgcacattgctaatggtgccggcttcttgattgaacatgcccatgacatt
ataatccacggactccaattccacaagcctcggcccaacgcccccggcccagttctaggc
cccgcagcaaaggtcgagccgaccggcgcaggagatgccgatgcattcccgatagtatac
tccttcaagatctggctggaccaaagcctctacagctgccacgacggcctccttgacgtc
actcgcgggtcgacggggatcacagtgtccaacaactggttcagggaccacgacaaggtc
atgctcctgggccacgacgacgggttcgttagagacaaagatatgaaggtcaccgtcgcg
tttaaccgcttcgggccgaactgcattcagcggatgccccggatccgacatgggtatgcg
cacgtggtgaataatttctatgatgggtggagagattatgctatgggtggcagcatgaat
cctactatcaagagtcagggaaatttatacgttgctgtcggtaataaagaggtgatatgg
aaggaggacggaccaggaagagggacgtcatggaatctgaaatcggtgaacgacgccttc
ataaacggcgcatcgtttaggcaggtgggcagcgccggcgtttcgccacattataagccc
gacgaggcgttcgccgccggaaatccagatcaggttcatgcactgacgagggacgccggt
gcgctccggtgtcatgcaaacggatgttaa
DBGET
integrated database retrieval system
