Asparagus officinalis (garden asparagus): 109848033
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Entry
109848033 CDS
T05243
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5 isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109848033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109848033
03016 Transfer RNA biogenesis [BR:
aof03016
]
109848033
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
109848033
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109848033
Transfer RNA biogenesis [BR:
aof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109848033
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
Polbeta
DNA_pol_B_palm
TUTase
Motif
Other DBs
NCBI-GeneID:
109848033
NCBI-ProteinID:
XP_020272890
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All DBs
Position
1:7736179..7768951
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AA seq
526 aa
AA seq
DB search
MESNGSILYETLDSFSFFSNPDPTPSESHAVFRNQITSSADLSADIPVADYFSLDVAAES
PPRDAEESPPLPSVDDQANGESKVSELAWFRSGSKFKSPMIQLHKEIIDFCNFVSPTPEE
EASRSAAMQGVLDVVKYIWPHSKVEVFGSFRTGLYLPTSDIDVVILDSKVKTPQIGLYAL
ARALSQRNIAKKTQVIAKARVPIIKFVEKKSGIAFDISFDMDGGPKAADFIKDAVKRLPP
LRPLTLILKVFLQQRELNEVYSGGVGSYTLLAMLIAFLQLHWRGQELLRCERSMEHNLGI
LLVKFFDFYGRKLNTLDVGVSCISSGTFYLKTDRGFLNTQRPELLSIEDPQAPDNDVGRN
SFNFFKVRSAFSMAYSLLTDAKTIIGLGSRKSILGTIIRPDPVLLDRKGGSNGELTFANL
LPGADEPLSQQFGNEDSVIYNWQLVDEEPLPREKIVANDDSAKRRASKAERRFKKGDCSV
ESSKRGNGENGFGSREVDIKKKRKKSFQADDDRFSRSLPRNWSRRY
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaatccaatggcagcatcttatacgaaaccctagattctttctctttcttctcaaat
cccgaccctactccgtccgaatcccacgccgtgtttcggaaccaaataacgtcttcggcc
gatttatcggccgatatccccgtcgccgattacttctctctcgacgtcgccgctgagtct
cctcctcgggatgctgaagaatctcctcctctgccttcggtcgatgatcaggctaatgga
gagagcaaggtctcggagcttgcttggtttcgttctggcagtaaattcaagagccccatg
attcagctccataaagagataattgatttttgcaactttgtgtcaccaactcctgaagaa
gaagcctcacgcagtgctgctatgcaaggtgttcttgatgtcgtgaaatatatttggcca
cactccaaagtggaagtatttggatcatttaggacaggtctttacctaccaaccagtgat
attgatgtggtgatcttggattcgaaggtcaaaactccacaaataggtctctatgctctt
gctagagcattatctcagagaaatattgccaaaaagacgcaggttatagctaaggctcga
gttcctattataaagttcgtggaaaagaaaagtggaatagcatttgacatcagttttgat
atggatggtggaccaaaggctgctgatttcattaaggatgctgtcaaaaggttgccacct
ctaaggccattgactttgattttaaaggttttcctgcagcagagggaattgaatgaggtg
tattcaggtggagttggttcatatacacttcttgcgatgctcatagcattcttgcagtta
cattggagaggtcaagaattattgagatgcgagcggtccatggagcataatctgggaatt
cttctggttaaattttttgatttctatggtcgcaaattgaacacgttagatgttggtgta
tcttgcatctcatcaggcactttttacttgaaaactgacagagggtttcttaacacacag
aggccagagcttctctcaattgaggatccccaggcacctgacaatgacgttgggaggaac
tccttcaacttttttaaggtgagatcagccttttcaatggcttactcattactgaccgat
gcaaaaaccatcatcggcttgggatcacggaaaagcatactcggaaccataatcagaccg
gacccggtgctcctagatcgaaagggtggaagcaatggggaactcacatttgctaacttg
cttcctggtgctgatgaacctttatctcagcaatttgggaatgaagatagtgtcatatac
aactggcaattagtagatgaagaacctctgcctagagaaaaaatagtagccaatgatgat
agtgcaaaaaggagggcctcgaaagcggaacggagatttaagaaaggggactgcagtgtg
gaatcatcaaaaagaggaaatggagaaaatgggtttggcagtagagaagtagatattaag
aagaaacgtaaaaagtcgtttcaagcagatgatgatagattcagcagaagtctcccaaga
aattggagtcgtagatactga
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