Anastrepha obliqua (West Indian fruit fly): 129242506
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Entry
129242506 CDS
T09777
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq04512
ECM-receptor interaction
aoq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129242506
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129242506
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
aoq00535
]
129242506
Proteoglycans [BR:
aoq00535
]
Extracellular matrix (ECM) proteoglycans
Others
129242506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
129242506
NCBI-ProteinID:
XP_054735156
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Position
3:complement(116645361..116655633)
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AA seq
700 aa
AA seq
DB search
MACRAVSLLFVTLVLAPLPNFAEISKRQNEENFDIGAYDDEEFVPVSPCSVQRAGDPDLT
NYDIISSYHFDEYYHQYQGVSQIIGSTGYQTAYHFEEYSNMTIESSQAFPKGVPDAFSFE
CTFRVPEFDPPNEWFLFELSDYRYESQMSVIMNPIYNALEFSLPKYDGSLQTVTFEELEI
FDYSWHKVMLGVTQDAVRLWVDCEPVPDRNGSLYTPLDVRSPIDSTEGAFTVARDCKTKS
TVPIDLQWMIFSCDVDKPERATCEDIPKYARAPKEMVEKEPLPAPRPTVVSSPTPGRPDL
TFLTSTTYRPFMLSSTPSALQGQELHACPEVCPRGPPGPPGPPGPRGFEGTPGQPSPYGN
QFDGRLSKGEKGEPGDFGMPGLPGAEGQRGLPGARGFDCVPGQKGESGAMGPPGPPGPSG
AFISDEKIRESVANITTDLLGSRGVSGMPGLPGLPGAIGQKGERGIPGLDGGMGERGETG
LPGEKGERGFVGPAGPAGPPGPPGESGTIHSEVRNVEEREIREICLAVVRDYISEIASTL
TGPPGPPGRRGYGRPGPPGSPGIQGDSGPQGPPGERGYPGIPGLQGPQGETGPRGPEGQK
GDRGDDGVGQPGQMGAPGLQGPEGRCVDGLPGRPGEAGVVGAPGEPGAHGPPGQPGVCPD
CTAYQAAYAYPLLLAQQQQNNKGPPNYYNKGPPVNYYNKG
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcttgcagagcggtgtcattactattcgtgacattggtactggcgcctctaccgaat
tttgctgaaatatcaaaacgacaaaatgaagaaaatttcgacattggcgcatatgatgac
gaggaatttgtgccggtgagtccttgcagcgtgcaacgagctggtgatcctgatcttacg
aattatgatatcatctcttcgtatcactttgacgagtactatcaccaatatcagggcgtc
agtcaaataattggttcgactggatatcagaccgcttatcactttgaggagtactccaat
atgactatcgagtcctcacaagcattccccaaaggtgtgcctgatgcattttcatttgag
tgcacttttcgtgtacccgaattcgatccgccaaatgagtggtttctcttcgagctctca
gactatagatatgaatcccagatgagtgtgatcatgaatccaatttacaatgcgcttgaa
ttttcgcttccaaaatatgatggttcactacagacagtaacattcgaggagttagaaata
tttgattactcatggcacaaagtaatgttgggcgttactcaggatgctgtgcgactgtgg
gtcgattgcgagcctgtacctgatcgaaatggcagcctatatacaccgttggatgtgcgc
agtccaatcgactcgactgaaggtgcctttacagtggcacgggattgcaaaactaaaagc
acagtgcctattgacttacaatggatgatatttagctgtgatgttgataagcctgaacgt
gccacctgtgaggatattcccaaatacgcaagagctcccaaagagatggtggaaaaagaa
ccgcttcccgcaccacgacccaccgtggtgtcttcgccaacacctggtcgtccggactta
acatttctcacatcaactacttaccgaccatttatgctgtcttctaccccctctgcgctg
cagggacaagaattacatgcttgcccggaagtatgccctagaggaccacccggaccacct
ggtccccctgggccacgaggtttcgaaggcacgcctggtcaacccagcccatatggcaac
cagttcgatggtcgcttaagtaaaggtgaaaaaggtgagccgggtgattttggcatgcct
ggcttacctggagcagaagggcagcgaggcttgccaggagctcgcggttttgattgtgta
ccgggacaaaaaggagaatccggcgccatgggaccaccggggcctccagggccttcagga
gcttttataagcgatgagaaaatcagagaaagtgtagcgaacataacaactgatttgtta
ggttccagaggtgtgtcaggtatgccaggcttaccaggcttaccaggcgccatcggacaa
aagggagagcgtggtataccaggattggacggaggtatgggggaacgtggtgaaaccgga
ctgccaggagagaaaggggaacgtgggtttgtaggcccagcaggacctgccggacctccc
ggaccgccaggtgaatcaggtacaatacacagcgaagtaagaaatgtagaagaacgtgaa
atacgagagatttgcttagctgttgttagagattacattagtgaaattgcttcgactttg
acgggaccacctggtccaccaggtagacgtggttatggacgccctgggccaccgggatct
ccaggaatacagggtgattcgggaccgcagggaccaccgggtgaacgtggctaccccggt
attcccggcctacaagggccacaaggtgaaactggtcctcgtggaccagagggacaaaag
ggtgatcgtggtgacgatggcgttggtcaaccgggacaaatgggtgcacctgggctgcaa
gggcctgaaggacgttgtgtggatggtttgccaggcagacctggtgaagctggcgttgtt
ggtgcaccaggcgaaccgggtgcacacggaccacctgggcaaccgggagtgtgtccggat
tgtactgcttatcaagcagcatacgcctatccattattgcttgcccagcagcaacagaat
aataaaggtccaccgaactactacaataaagggccgccagtcaattactacaataagggt
taa
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