Amycolatopsis orientalis: SD37_41180
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Entry
SD37_41180 CDS
T06703
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
aori
Amycolatopsis orientalis
Pathway
aori03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
aori00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SD37_41180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aori03400
]
SD37_41180
Enzymes [BR:
aori01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SD37_41180
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SD37_41180
DNA repair and recombination proteins [BR:
aori03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SD37_41180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
Ribosomal_S13
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ANN21362
UniProt:
A0A193CA52
LinkDB
All DBs
Position
complement(9364779..9365642)
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AA seq
287 aa
AA seq
DB search
MPELPEVEALAHHLREHAVGKTVFRIDVSSLSVLKTATPPWTELHGREVTGAGRFGKHLD
LVVGDLHLVVHLARAGWLRWSDALSPTPLKPGKGPISLRVHLDAAAGPGFDLTEAGTKKG
LAVWIVRDPEKEVASIARLGPDALSLDRSGLEKLFAGRTERLKTALTDQSLIAGIGNAYS
DEIMHMAKLSPYATTGKLSEGALDGLSEAIREVLTSAVTRSVGQSAARLKGEKRSGLRVH
ARTGLPCPVCGDTIREISFADKSFQYCPTCQTGGKPLADRRMSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttacccgaggtcgaagcgctcgctcaccacctgcgtgaacacgcggtgggc
aagacggtcttccgtatcgacgtgtcatccctcagcgtgctgaagacggcgacaccgccg
tggacggagctgcacggccgcgaggtcaccggggcgggccggttcggcaagcatctcgac
ctcgtcgtcggcgacctccacctggtcgtccatctggcgagggcgggctggctgcgctgg
tccgacgcgttgtcgccgacgccgctcaaacccggcaaggggccgatctcgctgcgcgtc
caccttgacgcggccgcgggcccgggcttcgacctcaccgaggccggcacgaagaagggc
ctggccgtctggatcgtgcgtgatccggagaaggaggtcgccagtatcgcgcggctcggg
ccggacgcgctgtcactggaccggtcgggactcgagaagctgttcgccgggcgcaccgaa
cggctgaagacggccttgaccgaccagtcgctgatcgccgggatcggcaacgcctactcc
gacgagatcatgcacatggcgaagctttccccctacgccacaacgggaaagctgtccgaa
ggggcgctggacgggctttccgaggcgatccgcgaggtgctgaccagcgccgtgacgcgc
tcggtcggccaatccgcggcccggctcaagggggagaagcggtccgggctgcgggtgcac
gcgcggaccgggctgccgtgcccggtctgcggcgacacgatccgcgagatctcgttcgcg
gacaagtcgttccagtactgcccgacctgtcagaccggggggaagcccctcgccgaccgg
cggatgtcgcgcctgctcaagtga
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