Alteracholeplasma palmae: BN85410380
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Entry
BN85410380 CDS
T03096
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
apal
Alteracholeplasma palmae
Pathway
apal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN85410380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apal03019
]
BN85410380
03009 Ribosome biogenesis [BR:
apal03009
]
BN85410380
Messenger RNA biogenesis [BR:
apal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN85410380
Ribosome biogenesis [BR:
apal03009
]
Prokaryotic type
rRNA helicases
BN85410380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
Flavi_DEAD
DUF6555
MsyB
Motif
Other DBs
NCBI-ProteinID:
CCV64615
UniProt:
U4KQI0
LinkDB
All DBs
Position
complement(1140188..1141597)
Genome browser
AA seq
469 aa
AA seq
DB search
MRTFSQFEIRNEILESLDLLGYKTPTEVQEEAIPEILNDKNVVIKSKTGSGKTATFSIPL
IQKIVWDKKNPQALILSPTRELAMQIKEEIFSIGRLARIKVEAIYGKSSFIKQEKLLKQR
NHFIVATPGRLLDHMTRKTIDLSEVDYLVIDEADEMLKMGFIEQIEEIIQQINPKQIILL
SATLEEKILNKIGTYITNPVYISVEDHNEESKSIQKYIKEDLNKMYAIKQYILENKIPSA
IIFCNTQEKVDELHYYLYDEKMLVKKLHGGLEQKIRTKTIKEFKEGFVRYLVATDVASRG
IDVKSVNYVINYEMPKDIKTFIHRVGRTGRMGEKGSCLTLLDYDDVSHFKSIMEENDYQT
EEVFFTTNETLNEDDELQTPIYIEKKDVKLNESILKLHINAGKKTKMRAVDIVGTICAID
GIKASDIGVINILDISTFVDIMNNKGQYVFEQLQTKPIKGRIRTVSKVL
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagaacttttagtcagtttgaaataagaaatgagatactagaaagtttagacttgtta
gggtataaaacgccaacagaagtccaagaagaagcaattccagaaatacttaatgataaa
aatgtagtgattaaatctaaaactggtagtggaaaaactgctactttttccataccacta
atccaaaaaattgtatgggataaaaaaaatccacaagcacttatcctttcaccaacaaga
gaacttgctatgcaaataaaagaagaaattttttcaataggcagattagcaaggattaag
gtagaagctatttatgggaaaagttcttttataaaacaagaaaaattacttaaacaaaga
aatcattttattgtcgcaactccaggtagattactagatcatatgacgcgaaagacaatt
gatttaagtgaagtagattacttagtaatagacgaagcagatgaaatgctaaaaatggga
ttcattgaacaaatagaagaaatcatccaacaaattaaccctaaacaaattattttatta
tcagctactctagaagaaaagattcttaataaaataggaacatatattactaacccagtt
tatatttctgttgaagatcataatgaagaaagtaaaagtatccaaaaatacattaaagaa
gatttaaacaaaatgtatgcaataaaacaatatatcctagaaaataaaataccatcagcc
attattttttgtaatacgcaagaaaaggtagatgaacttcattattatttatatgatgaa
aagatgcttgttaaaaagttgcatggtgggttagaacaaaaaattcgaacaaagacgatt
aaagaattcaaagaaggctttgttagatacttagtagcaaccgatgtcgcctcaagaggg
attgatgttaaaagtgttaattatgtgattaactatgaaatgccaaaagatataaaaacc
tttatacatagagtaggaagaacaggtaggatgggagaaaaaggctcatgtttaacatta
ttagattatgatgatgtctcacactttaaatccattatggaagaaaatgattatcaaact
gaagaagtcttttttacaacaaatgaaactttaaatgaagacgatgaattacaaacacct
atttatatagagaaaaaagatgttaaactaaatgaaagtattcttaaactacatattaat
gcaggaaagaaaactaaaatgagagctgttgatattgtaggaacaatttgtgctatagac
ggcataaaggcttctgatattggagttattaatattttagatatatcaacatttgtagat
attatgaataataaagggcaatatgtctttgaacaattacaaacaaaacctataaaaggt
agaattagaacagtatcaaaggttctataa
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