Anaeromyxobacter paludicola: AMPC_10340
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Entry
AMPC_10340 CDS
T08525
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apau
Anaeromyxobacter paludicola
Pathway
apau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMPC_10340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apau03019
]
AMPC_10340
03009 Ribosome biogenesis [BR:
apau03009
]
AMPC_10340
Enzymes [BR:
apau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMPC_10340
Messenger RNA biogenesis [BR:
apau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMPC_10340
Ribosome biogenesis [BR:
apau03009
]
Prokaryotic type
rRNA helicases
AMPC_10340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDG07921
UniProt:
A0ABM7X7U9
LinkDB
All DBs
Position
complement(1134960..1136840)
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AA seq
626 aa
AA seq
DB search
MQETSTTFDALDLHPALRQALSAKGYAAPTPVQAAVLAADHAGRDLLVSAQTGSGKTVAF
GLAVAPDLLGTGALPPAGQPLVLVIEPTRELAMQVQAELSWLYAPLGARVTACVGGMDPR
REQRALAAGCHVVVGTPGRLCDHLDRKNLTLGALRALVLDEADEMLDMGFRDELELILAA
APSKRRTIFFSATLPKPIVELARKYQQDALRIAATPAGEAHQDIEYRAHFVSTRERERAV
VNVLRLQDARSALVFCNTREAVNHLSASLDERGFATVAISGELTQAERTRALKQLRDGRA
RVLVATDVAARGLDLPDVSLVIHADLPRDAPGLLHRSGRTGRAGRKGVSVLLVPPARRAL
GERMLRTARVEVPWTPAPDADAVRARDQERLLEAVEALAAEPAEEDLAVAERLLAAKTPL
ALAAALVRSERQKLPSPEELPETGALRLREPARMRAPAADGEGPRPKGKVVNVTPGDSTW
FKLTLGRREGADPRFIVPLLCHRGGVTNREIGRIVILAEETRFEIARSVAERFAEAAGEP
DPRHPRQHILPSQPPPGYAPGAPGAGGKGAHPRAAAGGAARPAAKGYGKPAPRAGAKPYG
KPRPGVQTRSGEGHRTDGVPRYGKKR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagacctcgaccaccttcgacgccctcgacctccacccggcgctgcggcaggcg
ctctccgccaaggggtacgccgccccgacgccggtgcaggccgcggtgctcgctgccgac
cacgccggccgcgacctgctcgtctccgcccagaccgggtcggggaagaccgtcgccttc
ggcctggcggtcgcgccggacctgctcggcacgggcgcgctgccgcccgccggccagccg
ctcgtgctcgtcatcgagcccacccgcgagctcgccatgcaggtgcaggccgagctctcc
tggctctacgcgccgctcggcgcgcgggtcaccgcctgcgtgggcgggatggacccccgc
cgcgagcagcgggccctcgccgccggctgccacgtggtggtcggcacgccggggcggctc
tgcgaccacctcgaccggaagaacctcaccctcggcgcgctgcgggcgctggtgctcgac
gaggccgacgagatgctcgacatgggcttccgcgacgagctcgagctcatcctcgccgcc
gccccctcgaagcgccggaccatcttcttctcggccacgctgccgaagcccatcgtcgag
ctggcgcgcaagtaccagcaggacgcgctccggatcgccgccaccccggccggcgaggcc
caccaggacatcgagtaccgggcccacttcgtctccacgcgcgagcgggagcgggcggtg
gtgaacgtgctccggctgcaggacgcccgcagcgcgctcgtcttctgcaacacccgcgag
gcggtgaaccacctctcggccagcctcgacgagcgcggcttcgccaccgtcgccatctcc
ggcgagctcacgcaggccgagcgcacccgggccctgaagcagctgcgcgacgggcgcgcc
cgggtgctggtcgcgaccgacgtcgccgcgcgcgggctcgacctccccgacgtgtcgctc
gtgatccacgccgacctcccgcgcgacgcgccggggctcctccaccggagcggccgcacc
ggccgggccggccgcaagggggtctcggtgctgctcgtgccgccggcgcgccgcgcgctc
ggcgagcggatgctgcggaccgcccgcgtcgaggtgccctggacgccggcgcccgacgcc
gacgcggtccgcgcccgcgatcaggagcggctcctcgaggcggtcgaggcgctcgccgcc
gagccggccgaggaggacctcgccgtcgccgagcggctcctcgccgccaagaccccgctc
gcgctcgccgcggcgctggtccgctccgagcggcagaagctgccttcgccggaggagctg
cccgagaccggggcgctgcggctccgcgagcccgcgcggatgcgcgcgccggccgccgac
ggcgaggggccccggcccaagggcaaggtggtcaacgtgacccccggcgacagcacctgg
ttcaagctcaccctgggccggcgcgagggggccgacccgcgcttcatcgtgccgctcctc
tgccaccgcggcggcgtcaccaaccgcgagatcggccggatcgtgatcctcgccgaggag
acccgcttcgagatcgcgcgcagcgtggccgagcggttcgccgaggccgccggggagccc
gacccgcgccacccccgccagcacatcctcccctcgcagcccccgcccggctacgcgccc
ggcgcccccggagcgggggggaagggcgcgcacccgcgcgccgctgccggcggcgcggcc
cggccggcggcgaagggctacggcaagcccgccccccgggccggggcgaagccctacggg
aagccgcggccgggcgtccagacgcgctccggcgaggggcaccggaccgacggcgtgccg
cggtacggcaagaagcgttag
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