Alteromonas pelagimontana: CA267_011830
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Entry
CA267_011830 CDS
T06582
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apel
Alteromonas pelagimontana
Pathway
apel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CA267_011830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apel03021
]
CA267_011830 (rpoB)
03400 DNA repair and recombination proteins [BR:
apel03400
]
CA267_011830 (rpoB)
Enzymes [BR:
apel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CA267_011830 (rpoB)
Transcription machinery [BR:
apel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CA267_011830 (rpoB)
DNA repair and recombination proteins [BR:
apel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CA267_011830 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
QJR81416
UniProt:
A0A6M4MGU0
LinkDB
All DBs
Position
2693109..2697137
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVLFDKEAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTTEEVLDVFFEKVQVRIADDRLMME
IVPDRLRGETAQFEILDGEGNVLVETGRRISARHTRALEKANITELEVPAEYLIGRVFAR
SYVNEETGEVIVNANDELTLEMLAELSKAGIKEFETLYINELDHGSYISDTLRIDSSSNR
LEALVEIYRMMRPGEPPTKDAAETLFENLFFAEERYDLSSVGRMKFNRRLGREELTGSGT
LSKEDIIAVMKRLILIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFVIAQANIALDENGALVDDLIPSRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEKTVAVDSGVTVVAK
RGGTVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQRPTCNVGDPIVA
GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LSDEFSILADGTFSRARNVLLRAGVEEAKLDSTPREKWFELTLKDEDVQNELDQIAEQYT
EIKEAFDKKFEVKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQEEMA
KLRSFLQEVYTLGENHQEVDLDTFTDDEVKRLAENLRKGVPVATPVFDGAREEEIKAMLK
LADLPESGQITLFDGRTGRAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtactggaaattccatacctcctttcaattcagctagattctttcaaaaaatttattgag
atcgatgccgatggtcaatatggtttggaagcagcatttcgttccgtatttccgattaaa
agttactcaggcaactcagagcttcaatacgtaagctaccgtctgggtgagcccgttttt
gacgtcaaagagtgtcaaatccgtggcgtcacttattctgctccgttaagagtaaagctg
cgtttagtcttattcgataaagaagccgccccaggtaccgtaaaagatataaaagaacaa
gaagtgtacatgggtgaaataccattgatgaccgagaacggaacgttcgtcattaatggt
acagagcgcgttatcgtgtcacagttgcaccgttcacctggtgtattctacgatcacgat
aaaggtaaaacgcactcatcgggtaaggtgttgtacaacgcgcgggtcattccctaccgt
ggttcttggttagactttgagtttgatccaaaagataacctgtttgtacgtattgaccgt
cgtcgtaagctgcccgctactattattttgcgtgcgctggaaatgactaccgaagaagtt
cttgatgtcttctttgagaaagttcaagtgcgtattgctgatgatcgactgatgatggaa
atcgttcccgatcgtctacgtggtgaaactgcccagtttgagattttagatggcgaaggc
aacgtgctggtagaaaccggccgtcgtatttctgcgcgtcatactcgcgcattggaaaaa
gccaatatcactgaattggaagttccagctgaatatctcattggccgtgtgttcgcgcgc
tcctatgtgaacgaagaaaccggcgaagtcattgttaatgctaatgacgaactcactctc
gaaatgttagctgaactaagtaaagcaggcattaaagagtttgagacgttatatattaac
gaactggatcacggttcctatatatccgataccttacgtattgatagcagctcaaatcgt
ctggaagcgctggtagaaatctaccgtatgatgcgccctggcgagccaccgactaaagac
gcagcggaaacgttgtttgaaaaccttttctttgctgaagagcgttacgatctgtcttct
gttggacgtatgaagttcaaccgccgtcttggccgtgaagagttgacaggttcaggtaca
ctgagtaaagaagatatcatcgctgtaatgaagcgtttgattcttatccgtgatggtaag
gatgaagtggatgatatcgatcacttaggtaaccgtcgtatccgttctgtgggtgaaatg
gcagaaaatcagttccgtgtaggactggtacgtgttgagcgtgcagtaaaagagcgtttg
agtctcggtgatctagacaatatcatgccgcaggatctgattaacgctaagccgatttcc
gctgctgttaaagagttctttggctcttcacagttgtcacagtttatggaccagaacaac
cctttgtcagaagtgacgcacaaacgtcgtatttctgctttaggtccaggcggtctgact
cgtgaacgcgcaggttttgaagtccgggacgtacatccgactcactatggtcgcttatgt
cctattgaaacacctgaaggtccaaacattggtttgatcaactcgttagcgagtttcgct
cgtaccaatgatttcggtttccttgaaacgccgttccgtcgcattgtcgatggtgtagtt
accgacgaaatcgactatctttcggcaattgaagaaggccagttcgttatcgcccaggca
aatattgctttggacgaaaacggtgcgttagttgacgacttgataccttcgcgtcaccgt
ggcgagaccacgctaatgcctaaagaagatatcaaatatatggatgtgtcgcctcagcaa
atcgtttcgattgctgcgagcatcattccattccttgagcacgatgatgctaaccgggct
ctgatgggctcgaacatgcaacgtcaggcggttcctacgttacgtgctgacaaaccactc
gttggaacaggcatggagaaaaccgtcgcggttgactctggtgttactgttgttgcaaaa
cgtggtggtacggttgattacgttgacgccagccgaatcgttatcaaggttgatgaagat
gaaatgctgcctggtgaagccggtatcgatatttataacctgaccaaatacacgcgttca
aaccagaacacttgtattaatcagcgtcctacttgtaacgttggcgatccaatcgttgcg
ggtgatgtgttggcagacggaccatccactgatttaggcgaattagcgctaggtcagaac
atgcgtatcgcgttcatgccttggaatggttataacttcgaagactcgattctgatttca
gaacgtgttgttcaagaagaccgctttactaccattcatatccaggaactgagctgtatt
gctcgtgacactaagttaggtccagaagaaatcagttctgatattcctaatgtcggtgaa
tcggcacttagcaaactggatgaatctggtgttgtttatattggcgcagaagtaaaaggc
ggcgatattctcgtaggtaaagtgacacctaaaggtgaaacccagcttacgccagaagaa
aaactgttaagagccatatttggtgaaaaagcgtcagacgtaaaagatacgtctttacgt
gtaccaaatagtgttcacggtactgttatcgacgttcaggtcttcactcgtgatggcgtt
gagaaagataaacgtgcacttgaaatcgaagatatgcaacttcgtcaggttaagaaagat
ttgtctgatgagtttagcattcttgccgatggtactttctctcgcgctcgtaacgtattg
ttgcgtgccggtgttgaagaagccaaattagacagtacaccgcgcgaaaaatggtttgaa
ttgacgttgaaagatgaagacgtacaaaacgaactggatcaaatcgccgagcagtacacg
gaaattaaagaagccttcgataaaaaattcgaagtcaagcgtcgtaaaattactcaaggt
gatgatctggctccaggtgtccttaaaattgttaaggtttatctggcagttaaacgtcat
atccagccgggtgataaaatggccggtcgtcacgggaacaaaggtgttatttccaccatt
cagcccgttgaagatatgccgtacgacgaaaacggcacaccagtcgatatcgtactgaat
cccttgggtgtaccttcgcggatgaacatcggtcagatccttgaaactcacctgggcatg
gctgctcacggactcggtgtcaagattgatcgcatgatcaaagagcaggaagaaatggcg
aaacttcgcagcttccttcaagaagtctacaccttgggggagaaccatcaggaagtggat
ctggatacctttacagacgatgaggtcaaacgtctggcagaaaacctgcgcaaaggtgtt
ccggtggcaactcctgtatttgacggtgcccgtgaagaagaaattaaagcgatgttgaaa
ctggctgatttaccggaaagcggtcaaatcaccttgttcgacggtcgaacaggccgtgct
tttgaacgtccggttacagttggctatatgtatatgctaaaactgaaccacttggtagac
gacaaaatgcatgctcgttctacaggttcatatagtctggttactcagcagcctctgggc
ggtaaagctcagtttggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgctgcgtatacactgcaggaaatgctgacagtgaaatcagatgacgtgaacggc
cgtacgaagatgtataaaaacatcgttgatggcgatcacagaatggaacctgggatgcca
gagtccttcaacgtattacttaaagaaattcgctcgttgggtatcaacatcgagttggaa
gaaaagtaa
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