Acetobacter pasteurianus 386B: APA386B_2434
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Entry
APA386B_2434 CDS
T02786
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apk
Acetobacter pasteurianus 386B
Pathway
apk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APA386B_2434 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apk03021
]
APA386B_2434 (rpoB)
03400 DNA repair and recombination proteins [BR:
apk03400
]
APA386B_2434 (rpoB)
Enzymes [BR:
apk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APA386B_2434 (rpoB)
Transcription machinery [BR:
apk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APA386B_2434 (rpoB)
DNA repair and recombination proteins [BR:
apk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APA386B_2434 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
SPG4
Motif
Other DBs
NCBI-ProteinID:
CCT60473
LinkDB
All DBs
Position
2495853..2500025
Genome browser
AA seq
1390 aa
AA seq
DB search
MNAITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTPTGLQEVF
RSVFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWDVDEDTGS
RSIRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYL
FAARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKAKAAEGGD
VDSMEIKGMDANEILAYFYNAVTFVKTPKGWARPFDADSFRGLKLLAPLVDAETGEVVAE
AETKLTARMVRKIAEKTREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEITEARLAAL
EEAGITELPLLAIDAANGPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAETAEAMLN
GLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGRGQIDDID
NLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREFF
GSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG
PNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQADAKVNDQ
GALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKRDGIVDQIDGARIVVRATNATGSTQGV
DIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVLVAFMPWN
GYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEA
GIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGTSGTI
VDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLGQVAGAGF
KGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQARFESKVEK
LQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTAVD
LVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDRLKDVYGD
KVYSEDIANMSNDELVELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVDKSGQSQLID
GRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLIKELKSLG
LNVELEQGAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaatcactaaatcgttcacaggacggaagcggattcgcaaaagtttcgggcgg
attcccgaaatcgccccgatgccgaacctgattgacgtgcagcgtgcgtcttacgagaca
ttccttcaggcaaatgtatcgcctgatgcacgtactccaacaggtttgcaggaggtattc
cgttccgttttccccatcaatgattttgcggggcgggggcgtctggaattcgtcagttac
gaatttgaagagcctaaatatgatgtggaagaatgcattcagcgtggcctgacatatgcc
gcaccgctgaaggttattttgcgcctgatcgtatgggatgtggacgaagatacggggtct
cgttccattcgcgatattaaggaacagccggtttatatgggcgatatgccgctcatgaca
gacaacggcacctttatcgtaaacggtacggagcgcgttattgtcagccagatgcaccgt
tcacccggtgtgttctttgatcatgataaaggtaaaacgcattcttccggcaagtatctg
tttgccgcgcgcgttatcccttaccgtggttcctggctggacttcgaatttgacgccaaa
gatctgctttacgttcgtattgaccgtaagcgtaagctgcctgttaccacgctgctgtat
gcgcttgaaggcgcagcgtctgaagctgcacgcaaggcgaaggcagctgaaggtggcgat
gttgattctatggaaatcaaggggatggatgctaatgaaatcctcgcctatttctataac
gctgtcacattcgtaaaaacacctaagggctgggcgcgtccgtttgatgcggattctttc
cgtggtctcaagctgctggcaccgctggtggatgcagaaaccggtgaagtggtggcggaa
gccgaaaccaagctgacagcccgcatggtgcgcaagatcgcggaaaaaacgcgtgaagtg
ctggtgggtgaaatcgatctgcttggccgttacatcgctcatgatatcgtcaacatgcag
actggcgaaatctatggtgaggctggtgaagaaatcaccgaagcacgtcttgctgccttg
gaagaagctgggattacagagcttcctctgctggcgattgatgcagctaacggcccgtgg
atccgtgatacgctcacggtagataaaaacagcacgcgtgatgaagcgctgattgatatc
taccgcgtaatgcgccccggtgagccgccaacggctgaaacagccgaagccatgctgaat
ggcctgttctttgatcctgaccgctatgatctttccgccgttggtcgtgtgaagatgaat
atgcgtctggacatggatgtgccggacacagtgcgcgtgctgcgcaaagaagacattctg
cgcaccattaaaacgctgtgtgacctgaaagacggtcgcggccagattgacgatattgat
aaccttggtaaccgccgtgttcgctcggttggtgagctgatggaaaatcagtaccgcatt
ggcctgttgcgtatggaacgtgctatccgtgaacgcatgggttctgtggacattgatacg
gtcatgccgcatgacctgatcaacgctaaacctgccgctgctgctgtgcgtgagttcttc
gggtcttcccagctcagccagtttatggatcagaccaacccgctgtctgaagtcacgcat
aagcgtcgtctctcagcgcttggcccgggcggtttgacccgtgagcgcgcaggctttgaa
gtgcgtgacgttcatccaacacattacggtcgtatctgcccaattgaaacgccggaaggc
ccgaacattggtctgatcaactctttggcaacctatgccaaagtgaacaaatacggcttt
attgaaacgccttaccgtctggtgaaggacggtgtgttgcaggacggctggaagtacctc
tccgctatggaagaggaaaagctggttgttgcgcaggctgatgccaaggtgaatgatcag
ggtgcgctgacaagcgatctgatttctgtgcgccgtaatggtgatttccgtctggttccg
ccaacggaagttacagcgtgtgacgtttctcccaagcagttggtgtctgttgctgcagcg
cttattccgttcttggaaaacgatgacgcgaaccgtgcactgatgggttccaacatgcag
cgtcaggccgtgccgctggtgcgttccgatgcgccgctggttggcacaggcatggaagct
gctgtggcgcgtgattccggtgcaacaatcgtcgctaagcgcgatggtattgttgaccag
attgacggtgcccgtatcgtggtgcgtgcaacaaacgcaacaggctctacgcagggtgtg
gatatttaccgtctgcgtaaatattctcgttccaaccagtccacctgtatcaaccagcgc
cctctggtgcatgttggtgacaatgtgcgggctggcgatattattgccgatggtccttcc
acggagctgggcgaattggctctgggccgtaacgtgctggtcgcgtttatgccttggaac
ggctacaacttcgaagactccatcctgatttccgaacggattgccaaggatgacgttttc
acctcgatccatatcgaggaattcgaagtcatggctcgtgataccaagctgggtcaggaa
gaaatcacgcgtgatattccgaatgtgggtgaagaagccctgcggaacttggatgaagcc
ggtattgtttacgtaggtgccgaagttaatccgggtgatattctgatcggtaaggtgacg
ccaaagggtgaaagcccgatgacaccggaagaaaagcttctgcgtgccatctttggtgaa
aaagcctccgatgtgcgtgatacgtctctgcgtctgccgcctggcacgtctggtacaatc
gttgatgtacgcgtgttctcccgtcgtggcgtggacaaagatgaacgcgccatggctatt
gagcgtgcggaaatcgaacgtctggctaaagaccgtgacgacgaacgcgctattcaggaa
cgttctttctacagccgtctgcgtgaaaaactgctggggcaggttgctggtgctgggttc
aagggcattcgctccggaaccgagatcactgatgctgttctggacgaacacccgcgtgct
acatggcgccagattgttgtcgcttctgacagcgtgatggccgagcttgaaaccctgcgg
cgtgaatttgatgcggctattgcccgtattcaggcacgttttgaaagcaaggttgaaaag
ctgcagcgtggtgatgaactgccacctggcgtgatgaagatggtcaaggtctttgtggct
gttaagcgtaagctgcagcccggggataaaatggctggtcgtcatggtaacaagggcgtg
gtttcccgcgttgttccagttgaagacatgccgttcctggaagatggcacagccgttgat
ctggtgctgaacccactgggtgtgccttcacgtatgaacgtggggcagattctggaaacg
catctgggctgggcttgtgccaaaattggccgtggcatcggcgatatggtggatgaatac
cagcgtaatggcgaaaaacgtcaggaactgctggaccgtctgaaagatgtgtacggggat
aaggtttacagcgaagacattgccaacatgagcaatgatgagctggttgaactggccaat
aacctgcgcaagggcgtgccgattgcaacgccagtgttcgatggtgcctccattccggat
attgaagccatgcttgaaaaagctggtgttgataaatccggtcagtctcagctgattgac
gggcgcacaggtgagccgttcgagcgtaaaacaacggtcggttacatctacatgctcaag
ctgcaccatcttgttgatgacaagatccatgcacgctctatcggcccatactcgctggtt
acacagcagcctctgggtggtaaggcgcagtttggtggtcagcgctttggggaaatggaa
gtgtgggcgctggaagcatacggcgcagcttacactctgcaggaaatgctgactgtgaag
tcggatgacgtttctggccgaaccaaagtttatgaatccatcgtgcgtgagcaggatgat
tttgaggccggtattccggaaagctttaacgttctgatcaaagagctgaagtctctgggt
ctgaacgtagaactggagcagggggccgagtga
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integrated database retrieval system
