KEGG   Acetobacter pasteurianus 386B: APA386B_2626
Entry
APA386B_2626      CDS       T02786                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
apk  Acetobacter pasteurianus 386B
Pathway
apk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:apk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    APA386B_2626 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:apk03400]
    APA386B_2626 (mfd)
Enzymes [BR:apk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     APA386B_2626 (mfd)
DNA repair and recombination proteins [BR:apk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      APA386B_2626 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII MFD_D3 RecG_dom3_C AAA_16 UB2H SecA_DEAD
Other DBs
NCBI-ProteinID: CCT60660
UniProt: S6D838
LinkDB
Position
2695511..2698987
AA seq 1158 aa
MTAQTGAQKRIATVWGVPEGYDALLLARRARDHKGPVLHIARNDAAMARLNDMLAFVAPD
VDVLRFPAWDCLPYDRVSPNPAIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRK
TFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGEPLR
LDLFGDEVENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRFRTGWRDAFGPAATS
DPLYEHISDGRRHPGIEHWLPLFHDHLETLFDYLPDVAVSLEHQAEDVLKSRLEMIEDHY
QARRQPVREGEIPYRPLPPHLLYLDEKGWDACLSRVPVVAFSPYAQPDGAGGVDVGGRPG
KMFSKIVPGAQREQVFTLLGDQVKEWAQVKRRAFVAAWTKGSRERIATLLREHGVPTQTY
ETWEQAHKAKPGPVGLLTLGLERGFVADDLAFVSEQDLLGERIGRPPRRRRRADELIAEA
SELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGQKLYLPVENIELLSRFGS
DQAGVALDKLGGTAWQNRKSQMKKRIRDMAGELIRTAAMRALKEAPELVPPEGQWDEFCA
RFPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLA
KTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLTAIVPD
ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRSDKNRRAAEDWDWTPNIVMGLPVLIPDE
YVTDLPVRLGLYRRISALASDAELEAMEAELIDRFGSLPPEVKNLLDIVELKRLCRQAGV
ERVEAGPKGMVLQFRNNTFRNPAGLVQWMGKWKDGTVRLRPDHKMAVVRELTNVQRIDLA
RRVLKDLAGMCEKVMEMA
NT seq 3477 nt   +upstreamnt  +downstreamnt
atgacagcacagacaggcgcacaaaagcggatagcaaccgtatggggcgtgccagaaggg
tatgatgcccttttgctggcgcgtcgtgcgcgggatcataaaggcccggtgctgcatatt
gcgcgcaatgatgccgccatggcccgcctgaatgatatgctggcctttgtagcgcctgat
gtggatgtactgcgctttcctgcatgggattgcctgccgtatgacagggtttctcccaac
cctgccattgtggccgagcgtgtttccacccttacgcgcctgcttgaacccgcaaaaggc
cgccctcggcttgtgctggctacggtgaacgccgtggtgcagcgtgtggccccgcgtaaa
acatttgaagggcaatcactttccatccgcacgggggaaagtctggatcagggctttctg
atcgagctgctgatcgccaatggctacacccgcacggatacggtgatggaagccggggag
tttgcaacccgtggcggtatttttgatctgtaccccgccggagcaggtgaacccctgcgg
cttgatctgtttggggatgaggttgaaaacatccgcgcgtttgatcccggttcccaacgc
tctacggccaagcgtgatgggctgacactttgccctgtttctgagttctcgctggataag
gaaagcatttcacgcttccgcactggctggcgtgatgcctttggccccgctgccacgtct
gatccgctgtatgagcatatttcagatgggcgcaggcatccgggtatcgaacactggttg
cccttgttccatgatcacttggaaacactgtttgattacctgcctgatgttgctgtctcg
ctcgaacatcaggctgaggatgtgctgaaatcccggttggaaatgatagaagatcactat
caggcccgccgtcagcccgtgcgggaaggggaaattccctaccgcccgctgcctccgcac
ctgctctatctggatgaaaaagggtgggatgcctgcctgtcccgcgtgcctgtggtggca
tttagcccctatgcacagcccgatggtgccggaggtgtggatgtaggtggccgccccggt
aagatgttctccaaaattgtgcccggtgcccagcgtgagcaggtgtttacgctattgggg
gatcaggtaaaggaatgggcacaggttaagcgccgcgcctttgtggctgcgtggaccaaa
ggctcgcgcgagcgcattgccacattgctgcgtgaacacggtgtacccacccagacgtat
gagacatgggaacaggcccataaagccaaacccggcccggttgggttgcttacccttggg
ttggaacgcggttttgtagcggatgatctggcgtttgtttccgaacaggatctgctgggt
gaacgtattggccgcccaccacgccgccgtcgccgtgcagatgaactgattgccgaagcc
agcgaactttcagccggtgatctggtcgtgcatcaggattacgggattggccgttatgat
ggtctggaaaccgtaagcgtaggcgtggccccacatgattgtctgcgcctgttgtatgat
ggtgggcagaaactctacctgcctgtagaaaatatcgaactgctcagccgctttgggtca
gaccaggcaggtgttgcgctggataagctgggcggcacggcatggcaaaaccgtaaatcg
caaatgaaaaagcgtatccgcgatatggcgggtgagcttatcagaaccgccgccatgcgt
gccctaaaggaagcgccggagctggttccgccggaggggcagtgggatgagttctgtgcc
cgcttcccatttgtggaaacggatgatcaggcgcgtgccattgccgatgtgctagaggat
atgtcctccggccggccaatggatcgtctggtatgtggtgatgtgggctttggcaaaacc
gaggtagccttacgcgcggcttttgtggcggccatgtctggcgggcaggtagctgttgtg
gtgcctaccacgctgttggctcgacaacattatcgtactttcgccgcacggtttgagggc
tttcctatcaaggtggcacagctttcccgtatggtaacgggtaaggaagccacagcagtg
cgtaagggcattgcagatggtagcgtaaacattgttatcggcacgcacgcactgttggcc
aaaacggttcagtttgcctcgctcgaattgctgattattgatgaagaacagcattttggc
gtgtcccataaggagaagctgaaagccttgcgcgaagatgtgcatgtgctcacactttcc
gccacaccattgccgcgcacactccaactctcgctttccggcgtgcgtgaaatgagcctg
attgccaccccaccaacagacagactggcggtgcgcaccttcatcatgccgtttgatagt
gtggtgataagggaagccattcagcgtgaacgcttccgtggtgggcagattttctgtgtg
gccccgcgtattgaggatctggacaggctggccgaacggctaaccgccattgtgcccgat
gcccggctgatacaggcgcatggtcgtctttccgccaccgagctggaacgggtgatgacc
gaattttcagacggtaaatacgatattctgctctccaccaatattgtggaaagcgggctg
gatatgcctgcggtgaatacgctgattatccatagggcagatatgtttggccttgggcag
ctttaccagctgcgtgggcgtgtggggcgtggcaagcagcgaggctacgcttatctgaca
tggccacaaacgcatgtgctttcagcttccgcagaaaagcggctggaagtaatgcaaacg
ctggatacgctgggtgctggctttacgctggcctcgcacgatctggatttgcgtggtgcg
ggtaatctgctaggcgatcagcaatccggccatgtgcgcgaagtggggatcgaactttac
cagcagatgctggaagatgccgtggccgacctccgctcggataaaaaccgccgcgccgca
gaggattgggactggacgcccaacattgttatgggcctgcccgtgttgatcccggatgag
tatgtaaccgatctgcccgtaaggcttgggctataccgccgtatcagtgcactggcatct
gatgcggaactggaagccatggaagccgaactgatagaccgctttggttctctgccgccg
gaggtcaagaaccttctggatattgtggagcttaagcgtctgtgccgtcaggccggggta
gagcgtgttgaggctggccccaagggcatggtgctgcagttccgcaataataccttccgc
aacccggccgggttggtgcagtggatggggaaatggaaggacggcacagtccgcttgcgg
ccagaccacaaaatggcagttgtgcgcgaactcaccaacgtgcagcgcatagatctggct
cggcgcgtgctgaaggatctggccggtatgtgcgaaaaagttatggaaatggcctaa

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