Anas platyrhynchos (mallard): 101803516
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Entry
101803516 CDS
T02816
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
apla
Anas platyrhynchos (mallard)
Pathway
apla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101803516 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apla03019
]
101803516 (CNOT1)
Messenger RNA biogenesis [BR:
apla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101803516 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101803516 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101803516
NCBI-ProteinID:
XP_005025722
Ensembl:
ENSAPLG00000007162
LinkDB
All DBs
Position
12:complement(12491550..12549912)
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYACHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSSVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPIAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaacaggcacggt
cccgaggcagacaggcatttactacgctgcctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacgaaaccaaactttatctcgacgctgtcctacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatatttggtctcgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagttcatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcgtttggggtgggacag
gaacaaattgacgcttttctcaaaacattacgtagagattttccccaggagcgttgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagacttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgtccgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcagggttgacagatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaggataaaagtgacggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaagagttgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccacccgggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagaggcttgggcatggaggtttttccagttaatgccatatacagaccttggaaa
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacgcttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgaatctctgttgcgattg
gcagaagtgggacagtacgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccggatatgttggtattggccttattgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacgctcatgccgattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggaacatggggagcccttcatccaggcctgcatgactttctta
aagagaagatgtccatctatcttgggtggccttgctccggaaaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcgtgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatactcaccatggtggcgaactgcagcagcgtc
atgaacaaggctaggcagccgccacccggagtcatgccaaagggacgcccacccagtgcg
agcagcttggatgccatctctcctgtacagatcgactcgcttgcgggcatggcatctctt
agtttaggtggctcggctgctcctcatacccagagcatgcaaggcttccctccgaacttg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgtttccccctctttccacccaa
aaccagacaacaggtttcagtggcattggaggactctcgtcacaacttccagtaggtggt
cttactacgggtagcctgactggtataggaactggagccctgggcctccctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaaccagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttataaccatccacca
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgcatgctgaggaatttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttacaggagtacatagaatatggacagcagtctagagat
cctcctgtgaagatgcagggatcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctattgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcacaatcactcgaccaactggagtc
agcttcaagaaggatgtgccgccttccattaataccaccaatattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagaaaatgtccaggaaaaaattgct
ttcatctttaataatctgtctcagtcaaacatgactcagaaggttgaagaactgaaggag
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaaaagagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatccggag
tttaataaaatggttctgaatgaaacttacagaaacatcaaggtgctactgacatcagat
aaagctgcagccaacttctcggaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcttgcacacggatttggacgtgaaatcgctg
ctactggaagcatatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacgatg
gccattatgaatgttttagctgagctacatcaagaacatgacctaaaattgaatctaaag
tttgagattgaagtgctctgcaagaatcttgcattagacatcaatgagttgaaacctgga
agtctcctgaaagacaaggatcgcctgaaaaatctggatgagcagctctctgctccaaag
aaagatgtgaagcagccagaagagctaccaccaatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacggttcctccacagccccagtacagttaccat
gacatcaacgtctattctttaggagggttggctccacacattaccttaaaccctacgatc
ccgctgttccaggcccacccccagctgaagcagtgtgtgcggcaggcgattgagcgagca
gtgcaagagctcgtccatcccgtggtcgatcggtccatcaagattgccatgacgacgtgc
gaacagatagtcaggaaggattttgcactggattcggaggagtcgcggatgcgtgtggcc
gcgcaccatatgatgcggaacctgactgccgggatggccatgattacctgcagggaacct
ttgctcatgagcatagctaccaacctgaagaacagctttgctaccgcgctgagggcagct
tccccacaacagagggacatgatggagcaagcagctgcccagctagcacaggataactgc
gagctagcatgctgctttatccagaagacagctgtggaaaaggcaggccctgaaatggac
aagaggctagcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaagctgaacggatgccggaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttacgaagagtttgcacgcaatgtccct
ggcttcttgcctaccaatgacttaactcagcctacgggattcttggctcagcctatgaag
cagcaagcttgggctacagacgatgtggcacaaatatatgacaagtgtatgacagaactg
gagcaacacctgcagtccattccacataccctggccatgaatcctcaggctcaagcactg
cgcagcctcttggaggccgtagtagtggctcgtaactcccgtgatgctatcgctgcgctt
gggctgctgcagaaggctgtagagggcttactggatgccaccagcggggcagatgctgac
ctcctgctgcgctaccgtgagtgtcatctgcttgtgctgaaggctctgcaggacggtcgt
gcatatggatctccgtggtgtaataaacagattactaggtgcctgattgaatgcagggat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtacgatcttcacttggctcagtcaatggagaacggcttgaactacatggctgtg
gcgttcgccatgcagttagtaaagatcctgttggtggatgagagaagtgtcgcgcatgtt
acggaggcagacctgttccacacgatcgagacacttatgaggattaatgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaattatgaagcc
atgattgaccgtgctcacggaggtcccaatttcatgatgcattctggaatttcccaagcc
tctgagtatgatgatccgccaggtctgagggagaaggcagaatacttgctgagggagtgg
gtgaacctctaccattcggctgcagcgggccgcgacagtaccaaagcgttctctgcgttt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctgaaaacggat
gacctgatcacccgctttttccgtctttgtactgaaatgtgtgttgaaatcagctatcgt
gctcaggctgagcaacagcacaaccctgctgccaaccccactatgattcgagccaagtgc
taccacaatctggatgcctttgtgcgacttattgcactgctggtgaagcactctggagag
gcaaccaacaccgttacaaagatcaacctcctgaacaaggtccttggtattgtggtggga
gttcttctgcaagaccacgatgttcggcagagtgagtttcagcagcttccttaccatcgc
atcttcatcatgttgctgttggaattaaatgctcctgagcatgtgctggaaaccatcaac
ttccagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccaccggatatttattgcaagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagttactgatcgatcttttc
aagtacttggctcctttccttagaaacgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgac
taccactatgggttctgtgatgtgatcccacccaactgtattcagctaaggaatctgatc
ctgagtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtg
gacatgttaagtgaaattaatattgctccacgaatactcaccaatttcactggagtgatg
ccgccacagttcaagaaagatttggattcctatctcaaaacccgttctccagttactttt
ctgtctgacttgcgcagcaacttacaagtatcaaatgaacctggcaaccgctacaacatc
cagctgattaatgcactggtgctctacgtaggtactcaagctattgcgcacatccacaac
aaaggcagcacaccgtccatgagcaccattacccactcagcgcacatggacatcttccag
aatttggctgtagacctggacactgaaggtcggtacctcttcttgaatgcaatcgccaac
cagctgcgatatcccaacagtcacacccactacttcagttgcaccatgctttacctgttt
gcagaggccaacactgaggctatccaggagcagatcactagggttctcttggaacgactg
attgtaaataggcctcatccctggggtctccttattactttcattgagctgataaaaaat
ccagcgtttaaattctggaaccacgaatttgttcactgtgctccagaaattgagaagttg
ttccagtcggttgcacagtgctgcatggggcagaagcaggcccagcaagtgatggaaggg
acgggtgccagttag
DBGET
integrated database retrieval system
