Alpha proteobacterium HIMB5: HIMB5_00007770
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Entry
HIMB5_00007770 CDS
T02250
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HIMB5_00007770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apm03021
]
HIMB5_00007770
03400 DNA repair and recombination proteins [BR:
apm03400
]
HIMB5_00007770
Enzymes [BR:
apm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HIMB5_00007770
Transcription machinery [BR:
apm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HIMB5_00007770
DNA repair and recombination proteins [BR:
apm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HIMB5_00007770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFS47534
LinkDB
All DBs
Position
complement(696458..700546)
Genome browser
AA seq
1362 aa
AA seq
DB search
MQLSFTEKKNIRKSFGKLKEGLSIPNLIEVQKNSYKELTDFKEEAGDLTKGFDRVFKSIF
PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL
SAKEQEVYMGDVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR
VIPNRGSWLDFEFDVKDFLYFKIDRKKKILASTLLLALGYTKLEIANEFYESENYVYDSK
SYKWKTKFNPENYKAKNFSEEVIDAKTGKVVIKPGDKINFLNAKKLANEGLKDIFVSKES
LYGKFLHTDIKVSEEEEGTFKIGTELNDTIIEKILEANIHTIKISTTNAINKGPYLLTTI
LNDKNNTKDEAITEIYKMLRPGEPPTIEIATQIFNNLFFSSDRYDLSDVGRVKMNSRLSL
DCSDKITILRNDDIISIIHKMLDLRDGKDDVDDIDHLGNRRVRSVGELVENQARIGVYRM
ERAIKEKMTTLDVESAMPQDLINAKPLTVSLKDFFASSQLSQFMDQTNPLSEITHKRRVS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTYAKINKYGFIESPY
KRVKDGVVQDKVEYLSAMEETKYTIAQANTKLDKNGKIIEELVSCRQNLNFLLAKPDTID
YIDVSPKQLVSVAASLIPFLENDDANRALMGSNMMRQAVPLLKPESPLVGTGIESDVALD
SGVTIVAKRDGIVDKIDGKRIVIKATEETDFSKSGVDIYNLQKFKRSNQNTCINQRPLVR
VGDKVKSGDIIADGPSTRLGELALGKNVTVAFMPWQGYNFEDSILISERCVTDDVFTSVH
IVEYEIMARDTKLGEEEITRDIPNVNEDALKNLDESGIVYIGAEVNAGDILVGKVTPKGD
SASGPEEKLLRSIFGEKAIDVTDTSLRMSRGSSGTVVDVRVFNRHGIEKDERSITIERAE
IEQVQQDKIVEEEILERSIKQRATQILSGSKLSKKVKDITEGKELNAELINSLSINDIFK
ISVGNVQDESTLAQLKDQYTSAKQDITERFEDKVLKIRSGDDLLPSVMKMVKVFVAIKRR
LRPGDKMSGRHGNKGVVSKIVPVEDMPYREDGRPVDIVLNPLGVPSRMNVGQILETHLGW
ACKEFGEEIKKLINENQKKIEKTEKISKFLKSVYGDEAYSEKVEKLNKTEFKDLCENLQN
GIAISTPVFDGAKEQNVTEMLELANLPGSGQTYLWDGRTGEKFDRPVTVGIIYMLKLHHL
VEDKIHARSTGPYSLVTQQPLGGKAQLGGQRFGEMEVWALEAYGASYTLQEILTVKSDDV
AGRVKVYETIVKGEENFESGIPESFNVLVKEIKSLALNVELN
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgcaattatcttttactgaaaaaaaaaatattagaaaaagttttggaaaattaaaagag
ggattatcaattcccaatctaatagaggttcaaaagaactcttacaaagaattaactgac
tttaaagaagaagcaggtgatttaacaaaaggtttcgatagagtattcaaaagtatattt
ccaattgaagatttaaacgataaagcaactttagaatatgtttcatatagattagagaaa
ccaaaatttgatgttgaagaatgtatagctagaggtctaacatattcatcagctttaaaa
tgtactcttagacttgtggtttatgaaatagaccaagaaaataatactaaagatatatta
tcagcaaaagaacaagaagtttatatgggcgatgttccaatgatgactaatagcggaaca
tttattacaaatggagttcaaagagttgtagttaaccaaatgcatagaagtcctggtgta
ttttttgatcacgacaaaggaaaaactcatgcaagtggtaaattactatttaactgtaga
gttattccgaatagaggttcatggttagactttgagtttgatgtaaaagatttcttatac
tttaagatagaccgaaaaaagaaaattttagcttcaacattattactagctcttggttat
acaaaattagaaattgcaaatgagttttatgaaagtgaaaattatgtttatgactcgaaa
tcatataaatggaaaacaaagtttaatccagaaaattataaagctaaaaatttttcagaa
gaagtaattgatgcaaaaactggcaaggtagttatcaagcctggtgataaaattaatttt
ttaaatgcaaaaaaattagctaatgaaggtttaaaagatatatttgtatctaaagaatct
ttgtatggcaaatttttacacactgatatcaaagtaagtgaagaagaagaaggtacgttt
aaaattggtactgaattgaacgatacaattatcgaaaaaattttggaggcaaatattcat
acaatcaaaatatctacaacaaatgcgatcaataaaggtccatatttattaacaacaatc
ttaaatgataaaaataatactaaagacgaagctattactgagatctataaaatgttaaga
ccaggtgagccacctacaattgaaatagcaactcaaatttttaacaatctattctttagt
tcagataggtatgatttgtctgatgttggaagagtaaaaatgaattcaagattaagccta
gattgctctgataaaataactattttaagaaatgacgacatcatttctataattcacaaa
atgttagatttaagagatggcaaagatgatgttgatgatattgatcacctaggcaatcga
agagttagatctgttggtgaattagttgaaaatcaagcgaggataggtgtttacagaatg
gagagagcaattaaagaaaaaatgactactcttgatgttgaatctgcaatgcctcaagac
ttaataaacgctaaaccactaactgtttctctaaaagatttttttgcaagttctcaatta
tctcagttcatggatcaaactaatccattgtcagagattacacataaaagaagagtttct
gctttagggccaggtggtcttacaagagaaagagctggttttgaagttagggatgtacac
ccaacacattatggaagaatttgtccgatcgaaactccagaaggacctaacattgggtta
attaacagtttatctacttatgctaaaattaataagtatggttttatagaaagcccttac
aaacgagttaaagacggcgtggtgcaagacaaagttgaatacttatctgcaatggaagaa
actaaatatacaatcgctcaagcaaacactaaattagataaaaatggaaaaatcattgaa
gaacttgtgtcttgcagacaaaacttaaactttctattagctaaaccagatactatcgat
tacatcgacgtctcacctaaacaattagtttcagttgcagcttcattaatcccattttta
gaaaatgatgatgccaacagagctcttatgggttctaacatgatgagacaagcggttcct
ttattaaaaccagaatcgcctttggttggtacaggtattgaaagtgatgttgctttggat
tcaggtgttactattgtagctaaaagagatgggattgttgataagattgatggtaaaaga
attgtaattaaagctacagaggaaactgactttagtaaatctggagtagatatttacaat
cttcaaaaatttaaaagatcaaaccaaaatacatgtattaaccagagacctttagtgcgt
gtaggagataaagttaaatctggtgatattattgcagatggaccatcaactagattaggt
gaattagctctaggtaagaatgtaactgtagcgtttatgccatggcagggttacaatttt
gaagactctattttgatttcagaaagatgtgtaacagacgacgtatttacctcagttcat
attgttgagtatgaaattatggcaagagacacaaaacttggtgaagaagagattacaaga
gatattccaaatgtaaatgaagatgcgcttaaaaatctagatgagtcaggaatagtttat
attggtgctgaagttaatgctggagatattttggttggaaaagtgacacctaaaggagac
tcagcctctggtcctgaggagaaattactaagatcaatatttggtgaaaaagcaatcgat
gtaactgacacttctttaagaatgtctagaggaagcagtggaacagttgttgatgtaaga
gtatttaatagacatggaattgaaaaagacgaaagatctataactattgaaagagcagaa
attgaacaagttcaacaagacaaaattgttgaagaagagattttggagagaagtataaaa
caaagagctacacaaattttatcaggttctaaattaagtaaaaaagttaaagatataaca
gagggtaaagaacttaatgcagaattaataaatagtttaagtataaatgatatttttaaa
atcagtgttggtaatgttcaagatgagtcaacacttgctcagttaaaagatcaatacact
tctgccaaacaagatattacagaaagatttgaagacaaggttttaaaaatcagaagtggt
gatgatttacttcctagtgttatgaaaatggttaaagtttttgtggctatcaagagaaga
ttaagaccaggagataaaatgtctggaagacatggaaacaaaggggttgtcagtaaaatt
gttcctgttgaggatatgccatatagagaagatggaagaccggttgatatagttttaaat
cctcttggtgttcctagtagaatgaatgtgggccaaattttagaaacacacttagggtgg
gcgtgcaaagaatttggggaagaaataaaaaaattaattaatgaaaatcagaagaaaatt
gagaaaactgaaaaaatttctaaatttttaaaatccgtatatggcgatgaagcatattct
gaaaaagttgaaaaattgaacaaaacagaatttaaagatctttgtgaaaatcttcaaaat
gggatagcgatatcaacaccagtttttgatggagcaaaagaacaaaacgttactgaaatg
ttagaacttgctaacctaccaggatcaggtcaaacttatttgtgggatggaagaacaggt
gaaaagtttgatagacctgtaactgttggaataatttatatgctaaaattacatcattta
gttgaagataaaattcatgctagatcgacaggtccttatagtttagttactcaacaacct
cttggaggtaaggcacaattaggtggccaaagatttggtgaaatggaagtttgggcttta
gaagcttatggagcctcatatactttacaagaaatactaactgttaaatctgacgatgta
gcaggaagggtgaaagtttacgagacaattgtgaaaggtgaagagaattttgagtcaggt
attcctgagtcattcaacgtattagtaaaagaaataaaatctttagcattaaatgtggag
ttaaattaa
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