KEGG   Auxenochlorella protothecoides: F751_6534
Entry
F751_6534         CDS       T04132                                 
Name
(RefSeq) Replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03030  DNA replication
apro03410  Base excision repair
apro03420  Nucleotide excision repair
apro03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    F751_6534
   03410 Base excision repair
    F751_6534
   03420 Nucleotide excision repair
    F751_6534
   03430 Mismatch repair
    F751_6534
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:apro03032]
    F751_6534
   03036 Chromosome and associated proteins [BR:apro03036]
    F751_6534
   03400 DNA repair and recombination proteins [BR:apro03400]
    F751_6534
DNA replication proteins [BR:apro03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    F751_6534
  DNA Replication Termination Factors
   ELG1-RFC complex
    F751_6534
Chromosome and associated proteins [BR:apro03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    F751_6534
DNA repair and recombination proteins [BR:apro03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     F751_6534
  Check point factors
   HRAD17(Rad24)-RFC complex
    F751_6534
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_lid_RFC1 AAA_16 RuvB_N AAA_24 SLFN-g3_helicase Mg_chelatase DNAX_ATPase_lid AAA_11 AAA_14 AAA_assoc_2 AAA_30 AAA_5 ATPase_2 nSTAND_NTPase5 ResIII nSTAND3 AAA_2 AAA_19 NPHP3_N AAA_25 RNA_helicase AAA_18 AAA_3 AAA_7 TIP49 NB-ARC
Other DBs
NCBI-GeneID: 23617925
NCBI-ProteinID: XP_011402064
UniProt: A0A087STG1
LinkDB
Position
Unknown
AA seq 329 aa
MTVEQPWVEKYRPREIGDVASQGEVVKTLESALSSGNLPHLLFYGPPGTGKTTCALAIVR
QLFGADLLRARVLELNASDERGIAVVRNKIKSFAAISVGASPAGRSVPPYKVIILDEADA
MTTDAQAALRRTMETYSRVTRFIIICNYVSRIIEPLASRCAKFRFKPLHGTVIDDRINHI
CQVEGVQLGPDALCTLSRVAGGDMRRAITTLQSAVRLGGSPVRPQTLMDVAGVVPDAAAR
GLLHTCRESDFAGVQSAVADLIHEGYPAQEVLAEVQGAVLVDPGIDDVRKARVLERLALA
DKALIDGADEFLQLLAVASLTQRVILGQA
NT seq 990 nt   +upstreamnt  +downstreamnt
atgactgtggagcagccttgggtggagaaatatcgaccaagggagatcggagatgttgct
tcccagggggaggtggtgaaaacgctggagagcgccctcagctccggcaacctcccacac
ctcttgttctatggccctcccggcaccgggaagacgacctgcgccctggccatagtccgg
cagctgtttggcgccgacctcctccgtgcgcgggtgctggagctgaacgcttccgacgag
cgcggcatcgcggtggtccgcaacaaaattaagtcctttgcggccatctcggtgggcgcc
tcgcccgcgggtcgaagcgtgccaccctacaaggtcatcatcctggacgaggccgatgca
atgaccaccgacgcccaagctgcgctgcggcggacgatggagacctactcccgcgtcaca
cgcttcatcatcatctgcaactacgtgtcgcgcatcatcgagcccctcgcctcccgctgc
gccaagttccgcttcaagcccctgcacggcaccgtgatcgacgaccgcatcaatcacatc
tgccaggtggagggcgtgcagctgggccccgacgcgctttgcacactgtcccgcgtggcg
ggcggagacatgcgccgcgccatcaccacgctgcagagcgcggtgcggctgggcggctcg
ccggtgcggccgcagacactgatggatgtggcgggggtggtgccggacgccgcggctcgc
ggcctgctgcacacctgccgtgagagtgactttgcgggcgtgcagtccgccgtggcggac
ctcatccacgagggctacccggcccaggaggtgctggcagaggtgcagggcgcggtgttg
gtggaccccggcatcgacgacgtgcgcaaggccagagtgttggagcggctggcgctggcg
gacaaggcgctgatcgatggcgccgacgagttcctgcagctgctggcggtggccagcctg
acgcagcgcgtcatcctcggccaggcgtga

DBGET integrated database retrieval system