Acetobacter pasteurianus IFO 3283-26: APA26_09270
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Entry
APA26_09270 CDS
T01816
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
apx
Acetobacter pasteurianus IFO 3283-26
Pathway
apx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APA26_09270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apx03021
]
APA26_09270 (rpoB)
03400 DNA repair and recombination proteins [BR:
apx03400
]
APA26_09270 (rpoB)
Enzymes [BR:
apx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APA26_09270 (rpoB)
Transcription machinery [BR:
apx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APA26_09270 (rpoB)
DNA repair and recombination proteins [BR:
apx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APA26_09270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
SPG4
Motif
Other DBs
NCBI-ProteinID:
BAI11268
LinkDB
All DBs
Position
964830..969023
Genome browser
AA seq
1397 aa
AA seq
DB search
MGGAGATMNAITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYETFLQANVSPDARTP
TGLQEVFRSVFPINDFAGRGRLEFVSYEFEEPKYDVEECIQRGLTYAAPLKVILRLIVWD
VDEDTGSRSIRDIKEQPVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKT
HSSGKYLFAARVIPYRGSWLDFEFDAKDLLYVRIDRKRKLPVTTLLYALEGAASEAARKA
KAAEGGDVDSMEIKGMDANEILAYFYNAVTFVKTPKGWARPFDADSFRGLKLLAPLVDAE
TGEVVAEAETKLTARMVRKIAEKTREVLVGEIDLLGRYIAHDIVNMQTGEIYGEAGEEIT
EARLAALEEAGITELPLLAIDAANGPWIRDTLTVDKNSTRDEALIDIYRVMRPGEPPTAE
TAEAMLNGLFFDPDRYDLSAVGRVKMNMRLDMDVPDTVRVLRKEDILRTIKTLCDLKDGR
GQIDDIDNLGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAA
AAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRIC
PIETPEGPNIGLINSLATYAKVNKYGFIETPYRLVKDGVLQDGWKYLSAMEEEKLVVAQA
DAKVNDQGALTSDLISVRRNGDFRLVPPTEVTACDVSPKQLVSVAAALIPFLENDDANRA
LMGSNMQRQAVPLVRSDAPLVGTGMEAAVARDSGATIVAKRDGIVDQIDGARIVVRATNA
TGSTQGVDIYRLRKYSRSNQSTCINQRPLVHVGDNVRAGDIIADGPSTELGELALGRNVL
VAFMPWNGYNFEDSILISERIAKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEA
LRNLDEAGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLP
PGTSGTIVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYSRLREKLLG
QVAGAGFKGIRSGTEITDAVLDEHPRATWRQIVVASDSVMAELETLRREFDAAIARIQAR
FESKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFL
EDGTAVDLVLNPLGVPSRMNVGQILETHLGWACAKIGRGIGDMVDEYQRNGEKRQELLDR
LKDVYGDKVYSEDIANMSNDELVELANNLRKGVPIATPVFDGASIPDIEAMLEKAGVDKS
GQSQLIDGRTGEPFERKTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGG
QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYESIVREQDDFEAGIPESFNVLI
KELKSLGLNVELEQGAE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgggcggggcaggagcgacgatgaacgcaatcactaaatcgttcacaggacggaagcgg
attcgcaaaagtttcgggcggattcccgaaatcgccccgatgccgaacctgattgacgtg
cagcgtgcgtcttacgagacattccttcaggcaaatgtatcgcctgatgcacgtactcca
acaggtttgcaggaggtattccgttccgttttccccatcaatgattttgcggggcggggg
cgtctggaattcgtcagttacgaatttgaagagcctaaatatgatgtggaagaatgcatt
cagcgtggcctgacatatgccgcaccgctgaaggttattttgcgcctgatcgtatgggat
gtggacgaagatacggggtctcgttccattcgcgatattaaggaacagccggtttatatg
ggcgatatgccgctcatgacagacaacggcacctttatcgtaaacggtacggagcgcgtt
attgtcagccagatgcaccgttcacccggtgtgttctttgatcatgataaaggtaaaacg
cattcttccggcaagtatctgtttgccgcgcgcgttatcccttaccgtggttcctggctg
gacttcgaatttgacgccaaagatctgctttacgttcgtattgaccgtaagcgtaagctg
cctgttaccacgctgctgtatgcgcttgaaggcgcagcgtctgaagctgcacgcaaggcg
aaggcagctgaaggtggcgatgttgattctatggaaatcaaggggatggatgctaatgaa
atcctcgcctatttctataacgctgtcacattcgtaaaaacacctaagggctgggcgcgt
ccgtttgatgcggattctttccgtggtctcaagctgctggcaccgctggtggatgcagaa
accggtgaagtggtggcggaagccgaaaccaagctgaccgcccgcatggtgcgcaagatc
gcggaaaaaacgcgtgaagtgctggtgggtgaaatcgatctgcttggccgttacatcgct
catgatatcgtcaacatgcagactggcgaaatctatggtgaggctggtgaagaaatcacc
gaagcgcgccttgctgctctggaagaagctgggattacagagcttcctttgctggcgatt
gatgcagctaacggcccgtggatccgtgatacgctcacggtagataaaaacagcacgcgt
gatgaagcgctgattgatatctaccgcgtaatgcgccccggtgagccgccaacggctgaa
acagccgaagccatgctgaatggcctgttctttgatcctgaccgctatgatctttccgcc
gttggccgcgtgaagatgaatatgcgtctggacatggatgtgccggacacagtgcgcgtg
ctgcgcaaagaagacattctgcgtaccattaaaacgctgtgtgacctgaaagacggtcgc
ggccagattgacgatattgataaccttggtaaccgtcgtgttcgctcggttggtgagctg
atggaaaatcagtaccgcattggcctgctgcgtatggaacgtgctatccgtgaacgcatg
ggttctgtggacattgatacggtcatgccgcatgacctgatcaacgctaaacctgccgcc
gccgctgtgcgtgagttcttcgggtcttcccagctcagccagtttatggatcagaccaac
cccctgtctgaagtcacgcataagcgtcgtctctcagcgcttggcccgggcggtttgacc
cgtgagcgcgcaggctttgaagtgcgtgacgttcatccaacgcattacggtcgtatctgc
ccaattgaaacgccggaaggcccgaacattggtctgatcaactctctggcaacctatgcc
aaagtaaacaaatacggctttattgaaacgccttaccgtctggtgaaggacggcgtgctg
caggacggctggaagtacctctccgctatggaagaggaaaagctggttgttgcgcaggct
gatgccaaggtgaatgatcagggtgcgctgacaagcgatctgatctctgtgcgccgtaac
ggtgacttccgtctggttccgccaacagaagttacagcgtgtgacgtttctcccaagcag
ttggtgtctgttgctgcagcgcttattccgttcttggaaaacgatgacgcgaaccgtgca
ttgatgggttccaacatgcagcgtcaggctgtgccgctggtgcgttccgatgcaccgctg
gttggcacaggcatggaagctgctgtggcgcgtgattccggtgcaacaatcgtcgctaag
cgcgatggtattgttgaccagattgacggtgcccgtatcgtggtacgtgcaacaaacgca
acaggctctacgcagggtgtggatatttaccgtctgcgtaaatattcccgttccaaccag
tccacctgtatcaaccagcgccctctggtgcatgttggtgacaatgtgcgggctggcgat
attattgccgatggtccttccacagagctgggtgaactggccctgggccgtaacgtgctg
gtcgcgtttatgccttggaacggctacaacttcgaagactccatcctgatttccgaacgg
attgccaaggatgacgttttcacctcgatccatatcgaggaattcgaagtcatggctcgt
gataccaagctgggtcaggaagaaatcacgcgtgatattccgaatgtgggtgaagaagcc
ctgcggaacttggatgaagccggcattgtttacgtaggtgccgaagttaatccgggtgat
attctgatcggtaaggtgacgccaaagggtgaaagcccgatgacaccggaagaaaagctt
ctgcgtgccatctttggtgaaaaagcctccgatgtgcgtgatacgtctctgcgtctgccg
cctggcacgtctggtacaatcgttgatgtacgcgtgttctcccgtcgtggcgtggacaaa
gatgaacgcgccatggctattgagcgtgcggaaatcgaacgtttggctaaagaccgtgac
gacgagcgcgctattcaggaacgttctttctacagccgtctgcgtgaaaaactgctgggg
caggttgctggtgctgggttcaagggcattcgctctggaaccgagatcactgatgctgtt
ctggacgaacacccgcgtgctacatggcgccagatcgttgtcgcttctgacagcgtgatg
gccgagcttgaaaccctgcggcgtgaatttgatgcggctattgcccgtattcaggcacgt
tttgaaagcaaggtggaaaagctgcagcgtggtgatgaactaccacctggcgtgatgaag
atggtcaaggtctttgtggctgttaagcgtaagctgcagcccggggataaaatggccggt
cgtcatggtaacaagggtgtggtttcccgcgttgttccagttgaagacatgccattcctg
gaagatggcacagccgttgatctggtgctgaacccactgggtgtgccttcacgtatgaac
gtggggcagattctggaaacgcatctgggctgggcctgcgccaaaattggccgtggcatc
ggcgatatggtggatgaataccagcgtaatggcgaaaaacgtcaggaactgctggaccgt
ctgaaagatgtgtacggggataaggtttacagcgaagacattgccaacatgagcaatgat
gagctggttgaactggccaataacctgcgcaagggcgtgccgattgcaacgccagtgttc
gatggtgcctccattccggatattgaagccatgcttgaaaaagctggtgttgataaatcc
ggtcagtctcagctgattgatgggcgcacaggtgagccgttcgagcgtaaaacaacggtc
ggttacatctacatgctcaagctgcaccatcttgttgatgacaagatccatgcacgctct
atcggcccatactcgctggttacacagcagcctctgggtggtaaggcgcagtttggtggt
cagcgctttggggaaatggaagtgtgggcgctggaagcatacggcgcagcttacactctg
caggaaatgctgactgtgaagtcggatgacgtttctggccgaaccaaagtttatgaatcc
atcgtgcgtgagcaggatgattttgaggccggtattccggaaagctttaacgttctgatc
aaagagctgaagtctctgggtctgaacgtagaactggagcagggggccgagtga
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integrated database retrieval system
