Aquimarina sp. AD1: D1815_22655
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Entry
D1815_22655 CDS
T05625
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aqa
Aquimarina sp. AD1
Pathway
aqa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1815_22655 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqa03021
]
D1815_22655 (rpoB)
03400 DNA repair and recombination proteins [BR:
aqa03400
]
D1815_22655 (rpoB)
Enzymes [BR:
aqa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1815_22655 (rpoB)
Transcription machinery [BR:
aqa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1815_22655 (rpoB)
DNA repair and recombination proteins [BR:
aqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1815_22655 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
Tudor_1_RapA
Motif
Other DBs
NCBI-ProteinID:
AXT58421
LinkDB
All DBs
Position
5243312..5247121
Genome browser
AA seq
1269 aa
AA seq
DB search
MLATQTERLNFSSVKNRPDYPDFLDIQIKSFQDFFQLETKSEERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYDLQECIERGLTYSVPLKARLKLFCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKSGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLDKDHLDEIVDSGAKTILLHKEDNQ
KGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLNIEMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVFAK
VNSMGFLETPYRKVEDGKVDLSEFRYLSAEEEEEKLIMQANLPLEEDGKIQSDKVIARME
GDFPVIEPSSVNYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRVDAPI
VGTGLERQVASDSRVLINSEGAGVVEYVDAQKITIKYDRTEEQRMVSFDSDSKTYNLIKF
RKTNQGTSINLKPIVRVGDRVNKGQVLCQGYATENGELALGRNMKVAFMPWKGYNFEDAI
VISEKVVRDDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRVGAE
IKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVIDKKLFAR
AIKDKRKRSQDKEDISILERSYDAKFALLKAELVDKLFVIVGGKTSQGVINDLGEEVLPK
GKKFTQKMLNSVDDYAHLTKGTWTTDDSLNKMVADLIHNFKIKENDLQGNLRREKFTISV
GDELPSGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVREEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGQKLGRKYATPIFDGASLDQINEFTDEAGIPRFGHTYL
YDGGTGDRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGEPMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaacgcaaactgaaagattgaatttttcttccgtaaagaatagacctgattat
cctgatttcttggatatacagatcaaatcctttcaagacttttttcaattagaaacaaag
tcagaagaaagaggaaatgaaggtctttataataccttcatggaaaatttcccgattacg
gacacacgtaatcaatttgtacttgaatttttagactactttgtagacccaccaagatat
gatttgcaagaatgtatagagagaggtcttacatatagtgttccgcttaaggcgcgtcta
aaacttttctgtaccgatcctgaacacgaagattttgagacgattgtacaggacgtatat
ttaggaacaattccttatatgactcctagtggtacattctgtattaatggagcagaacgt
gttgttgtatctcaattacaccgttcaccaggtgttttctttggacaatcattccatgca
aatggaactaagctatattctgcaagagtaattccttttaaaggatcttggatagaattt
gcaacagatatcaatagcgttatgtacgcatatattgatagaaagaaaaaattaccagta
actactcttttccgtgctatcgggtttgaaagagataaggatattttagaaatttttgat
cttgcagaagaagtaaaagtttctaaatctggattgaaaaaagtactagggcgtaagtta
gcggcacgtgtattaaatacatggcatgaggatttcgtagatgaggatacaggagaggtt
gtttctatagagcgtaacgaaattgtattagatcgtgatactgttcttgataaagatcac
ttagatgagatcgtggattctggagctaaaactattttgcttcataaagaagataatcag
aaaggtgattatgcgataatccataatacattacaaaaagatcctacgaattctgaaaag
gaagccgtagaacatatataccgtcaattacgtaatgcagaaccgcctgatgaggagact
gcaaggggtattattgacaagttattcttctctgatcaacgttacaaccttggtgaagta
ggtcgttatagaatgaataaaaaactaggtcttaatattgaaatggataagcaagtgctt
actaaagaagatattattactattataaaatacttaattgagttaatcaattcaaaagct
gagattgatgatattgatcacctttctaaccgtcgtgtaagaactgtaggagaacaatta
tcacaacagtttggagttggtctagcacgtatggcacgtacaattcgtgagcgtatgaat
gttagagataatgaagtatttacacctattgatttgattaatgcaaagacattgtcttct
gtaattaattctttcttcgggacgaatcagttatctcagtttatggatcaaacgaatcca
ttagcagagattacgcacaagcgtcgactttctgctttaggaccaggtggtttatcaaga
gagcgtgctggtttcgaggttcgagatgtacattatacacactatggtcgtttatgtcca
attgaaactccagaaggaccgaatattggattaatatcttcactagcagtttttgccaaa
gtgaattcaatggggttcttagaaactccttaccgtaaagttgaagatggaaaagtagat
ttaagtgagtttagatacttaagtgcagaggaagaggaagaaaaattaataatgcaagcg
aacttgccgttagaagaagatggtaagattcaaagtgataaggtaattgctcgtatggaa
ggtgacttcccggtgatagaaccatcatctgtaaattatgctgatgttgctcctaatcaa
attgcctctatttctgcatctttaattcctttcttagaacatgatgatgcgaaccgtgca
ttgatgggatcgaatatgatgcgtcaggcagtaccattattaagagttgatgcaccaatt
gttggtacaggactagagcgtcaagtagcttcagattctcgtgtattaattaactcagaa
ggagcaggagttgttgagtatgtagatgcacaaaagataactattaagtatgatagaacg
gaagaacaaagaatggtaagttttgatagtgattctaaaacttataaccttattaaattc
cgtaaaacgaatcaaggtacttctattaatcttaaaccgatcgtaagagttggtgataga
gtaaataaaggacaggttctatgtcaaggttatgcaactgaaaatggagaacttgcttta
ggaagaaatatgaaggttgccttcatgccttggaaaggatataactttgaggatgcaatc
gtaatttctgagaaagttgttagagatgatatctttacttctattcatatcgatgagtac
tctttagaagtaagagatactaagttagggaatgaagaattaactaacgatattcctaat
gtttctgaagaagcgactaaggatcttgatgaaaacggaatgatccgtgttggtgctgag
attaagccaggagatattcttatcggtaagattacgccaaaaggagaaagtgatcctaca
ccagaagagaaattattaagagctatctttggtgataaagctggagatgttaaagatgct
tctttaaaagcttcaccatctttacacggtgttgttatagataagaaattatttgctcgt
gcgataaaagataagcgtaagcgttctcaggataaagaagatatttcaatcttagagcga
tcgtatgacgctaaatttgcattattaaaggcagagttagtagataaattattcgtaatc
gttggaggtaaaacttcgcaaggagttattaacgatttaggagaagaagtacttccaaaa
ggtaagaagtttactcaaaaaatgcttaatagtgttgatgattatgctcatcttactaaa
gggacttggactactgatgatagtcttaataagatggttgcggatcttatccacaacttt
aagattaaagaaaatgatttacaaggtaacttgcgtagagagaaatttacgatctctgtg
ggagatgaattaccttctggaattataaaacttgctaaagtttacattgctaaaaaacgt
aaactaaaagtaggtgataagatggcaggtcgtcacggtaacaaaggtattgttgcccgt
atcgtaagagaagaagatatgccattcttagaagatggaacaccagtagatattgtattg
aatccactaggggtaccttctcgtatgaatattggtcagatctatgaaactgtactaggt
tgggctggtcagaaattaggtagaaaatatgctactccaatttttgatggagcttcttta
gatcagattaatgaatttacagatgaagctggtattccaagatttggtcatacatattta
tatgatggtggtacaggagatcgttttgatcaaccggcaactgtaggtgtgatttacatg
cttaagttaggtcatatggtagatgacaaaatgcacgcacgttctattggtccttattca
ttgattactcagcaaccacttggtggtaaagctcagtttggaggtcagcgttttggagag
atggaagtttgggcattagaggcatatggtgcttctgctacccttcgtgagatattgact
gttaaatctgatgatgttataggaagagctaaaacatacgaaagtattgttaaaggtgag
cctatgccagaacctggattgccagaatcattcaacgtacttatgcacgaattgaaaggt
cttggtctagatatcagattagaagaataa
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