Aquiluna borgnonia: HRU87_00705
Help
Entry
HRU87_00705 CDS
T06624
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aqg
Aquiluna borgnonia
Pathway
aqg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aqg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HRU87_00705 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aqg03021
]
HRU87_00705 (rpoC)
03400 DNA repair and recombination proteins [BR:
aqg03400
]
HRU87_00705 (rpoC)
Enzymes [BR:
aqg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HRU87_00705 (rpoC)
Transcription machinery [BR:
aqg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HRU87_00705 (rpoC)
DNA repair and recombination proteins [BR:
aqg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HRU87_00705 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF4848
ProQ_C
Motif
Other DBs
NCBI-ProteinID:
QKJ24764
UniProt:
A0A7D4PWN3
LinkDB
All DBs
Position
128314..132492
Genome browser
AA seq
1392 aa
AA seq
DB search
MSVRVENFSALRVGLATSEDIRSWSSGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWE
CSCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLN
MAPKDLEKIIYFAAYRVMDIDHELKDGEYDLVREEYVSRIRSLVDARDEEFEAAAGAELA
ELRELGLELQVSNKFWETPRWVEKQFAKTVEQLIMAEEKDADAFWSARALAQETDEEQDD
AVVRTADETKKIKKLMADFKKKTDKIVREYARLERPSNLHKEQLAWRMFLNASVGQLLPN
DVVFDHFDYYFSDYIITEIGAEAVLQVLAAFDLEGAAAELRAEIATTKGSKQTQAIKRLK
VVNSFLSSGTPPTSMVLSVLPVLPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRF
VDLGAVPKTILNNEKRMLQEAVDALFDNGRRGRAVTGTGNRALKSLSDLLKGKQGRFRQN
LLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLGLAQNIKSAKRMV
ERSRPQVWGVLEEVIRERPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADF
DGDQMAVHLPLSVEAQAEARILMLASNNILKPSDGRPVATPTQDMIIGLFHLTAEVPGGK
GEGSAFTSMAEAQMAFDLHHLDLGAKVRIRLEGELKETTFGRALFNETLPEAYPYVEMQV
GKKQLGQIVSDLVEMFSRTEVAQALDKLKDAGFYWATRSGVSMSISDANFDPKGEFDKER
ATRILKAEKAHTKIQEAFDNGLKSDLERRDELGALWFKETNEIQKLLQESIPHDNAIYKM
VTSGARGNWLQIRSIMGMRGPVATSSGDFAPMPVKGNYLLGLTPHEYFINATGARKGNAD
TAMKTAAAGYLTRRLVDVAQDVIIQIDDCGTSRGLEKDLLDDDQVELSIVGRTNLADVKV
GKDVLVKAGENIDHATVRRLKEAGVETINVRSVLTCEAEAGICAQCYGVSLATNQKVTVG
EAIGIIAAQSIGEPGTQLTMRTFHTGGAASEAKKQTILKSIGGQKVRVERLISYDITQGL
NGVTDLLEARVGWRQAGKVAVMAFWNGKVDIIEKVSATGAKSFDVYVRPQGEAAEKEAES
LALQYSFSRTASKTFKKLSPYLPITTVTNIGDLVVEKGQVVEAGDYIVDGTPIPHEVLMI
KGAREAAAEIIRGVQAIYGSQGVPLHDKHLEVIVRQMLNKVTVIDSGDTEMLPGEIIDRQ
RFAVQNRAAVAQGLKPASARQEVMGMTRASLAAQSWLSAASFQETTRVLTQAALDRREDR
LVGLKENVIIGKLIPAGTGLLAHRDFEVDGTEEAKAERYPNRIWSDASFDDADLSSQELS
MSIADPFSIDEN
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaagagtagaaaacttcagtgcccttcgggttggtcttgcaacttccgaggac
atccgctcctggtcctcaggcgaggtaaagaagcctgagaccatcaactacagaacccta
aagcccgagaaggacggactgttctgcgagaagatctttggtcccaccaaggactgggag
tgctcgtgcggtaagtacaagcgcgtccgctttaagggaatcgtctgtgagcgctgtggc
gttgaggtaaccaagtcctcggttcgccgtgagcgcatgggccacatcgagcttgccgct
ccagtgacccacatctggtacttcaagggtgttccttctcgcctgggctacctgctcaac
atggcgccaaaggacctcgagaagatcatttacttcgccgcttaccgcgtcatggacatt
gaccacgagctcaaggacggcgagtacgacttagttcgcgaggagtacgtctcccgcatt
cgctcgctggttgacgctcgcgacgaggagttcgaggctgctgcaggtgcagagctagct
gaacttcgtgagcttggccttgagcttcaggtctccaacaagttctgggagaccccgcgc
tgggttgagaagcagtttgctaagaccgttgagcagctgatcatggctgaggagaaggat
gccgacgcattctggtccgctcgcgcgctagcccaggagactgatgaggagcaggacgac
gcagttgtccgcaccgcggatgagaccaagaagatcaagaagctcatggcggacttcaag
aagaagaccgacaagatcgttcgcgagtacgctcgtctggagcgcccatccaacctccac
aaggagcagttggcatggcgcatgttcttgaacgcttcggttggccagcttttgccaaac
gacgttgtctttgaccacttcgactactacttctctgactacatcatcaccgagatcggt
gctgaggcagtgctgcaggtattggccgcgttcgatctcgagggtgctgctgcagagctg
cgcgccgagatcgcaaccaccaagggctcaaagcagactcaggccatcaagcgtcttaag
gtagtgaacagcttcctgtcctccgggaccccgccaacctcaatggtgctctcggtgctg
ccggtgctacctcctgagattcgcccgatggttcagctggacggtggccgctttgcgacc
tctgacctaaacgacctctaccgccgcgtgatcaaccgcaacaaccgcctaaagcgcttt
gttgacctcggagcggtaccaaagaccattttgaacaacgagaagcgcatgcttcaggag
gctgtggacgcactgtttgacaacggtcgccgcggtcgtgccgttaccggaaccggtaac
cgtgcactgaagtcactctctgacctactcaagggtaagcagggtcgtttccgtcagaac
cttctgggtaagcgcgttgactactcgggtcgttcggtaatcgtggttggtcctcagctg
aagctgcaccagtgtggtcttccaaagctgatggctcttgagctcttcaagccgtttgtg
atgaagcgtttggtggacctgggtctagcccagaacatcaagagcgcaaagcgcatggtt
gagcgttcacgcccacaggtttggggtgtcctcgaagaggtcatccgcgagcgtccagtg
ctactgaaccgtgcaccaaccctgcaccgcctaggtattcaggcctttgagccggtactg
gttgagggtaaggcaattcagctgcacccgctggtctgtaccgcgttcaacgctgacttc
gatggtgaccagatggctgtccacctgccgctttcggttgaggctcaggctgaggcccgc
atcttgatgctcgcttcgaacaacattctgaagccttcggatggtcgcccagttgccacc
ccaacccaggacatgatcatcggtctgttccacctgaccgcagaagttcctggcggcaag
ggtgagggttcggctttcacctcgatggctgaggctcagatggcgtttgacctgcaccac
ctagacctaggtgccaaggttcgcattcgcctggagggtgagttgaaggagactaccttc
ggtcgcgctctattcaacgagaccctgccagaggcttacccatacgttgagatgcaggtc
ggcaagaagcagctcggtcagatcgtttccgatctggttgagatgttcagccgcaccgag
gtagctcaggcactggacaagctgaaggatgcaggtttctactgggcaacccgctcaggt
gtttccatgtccatctccgatgcaaacttcgaccccaagggcgagtttgacaaggagcgc
gcaacccgcattctcaaggctgagaaggctcacaccaagattcaggaagccttcgacaat
ggtttgaagtctgacctggagcgtcgtgacgagctgggtgcgctgtggttcaaggagacc
aacgaaattcagaagctgctacaggaatcgatcccacacgacaacgccatctacaagatg
gttacctcgggtgctcgcggtaactggctgcagattcgttccatcatgggtatgcgtgga
ccggttgccacctcctccggtgacttcgctccgatgcctgtgaagggtaactacctgctg
ggcctaaccccgcacgagtacttcatcaacgccaccggtgcccgtaagggtaacgctgac
accgccatgaagactgcggccgctggttacctaactcgccgtctggttgacgtggctcag
gatgtcatcatccagatcgatgactgtggcaccagccgcggtctagagaaggacctgctg
gacgacgaccaggtagagctatcgatcgtgggccgcaccaacctcgctgacgtcaaggtt
ggcaaggacgtgctggtcaaggccggcgagaacatcgaccacgccaccgtgcgcagactg
aaggaagctggcgttgagaccatcaacgttcgttccgttctgacctgtgaggctgaggct
ggcatctgtgctcagtgctacggcgtatcgcttgctaccaaccagaaggtaaccgtcggt
gaggccatcggtatcatcgccgcacagtcgatcggtgagcctggaactcagctgaccatg
cgtaccttccacaccggtggtgccgcatccgaggctaagaagcagaccattttgaagtcc
atcggtggtcagaaggttcgtgttgagcgtctgatctcctatgacatcacccagggtcta
aacggtgttaccgacctgcttgaggcccgcgttggttggcgtcaagctggcaaggttgca
gttatggccttctggaacggaaaggtcgacatcatcgagaaggtctccgccaccggcgca
aagagcttcgatgtctacgtccgcccacagggtgaggctgcggagaaggaagctgagtct
ttggctctgcagtacagcttctcccgcaccgcttccaagaccttcaagaagctaagccca
tacctcccaatcaccaccgtcaccaacatcggtgacctggttgtcgagaagggtcaggtc
gttgaggccggagactacatcgtggatggaaccccaattcctcacgaggtgctgatgatc
aagggtgctcgtgaagcagcagccgagatcattcgcggtgtccaggcgatctacggctcc
cagggtgttccgctgcacgacaagcacctcgaggtgattgttcgtcagatgctgaacaag
gtaaccgtcatcgactccggcgacaccgaaatgctgccgggtgagatcatcgaccgccag
cgcttcgcagttcagaaccgtgcagctgttgctcagggcctaaagcctgcgtcagctcgt
caagaggtgatgggtatgacccgtgcatcgcttgctgctcagtcttggctgtctgccgct
tcgttccaggagaccacccgagttctaactcaggccgctctggaccgccgcgaagaccgc
ctggttggactgaaggagaacgtcatcatcggaaagctaatcccagccggaaccggtctg
ctagctcaccgcgacttcgaggtggacggcaccgaagaggccaaggcagagcgctacccg
aaccgtatctggtcggatgcatcgttcgatgacgctgacctgagctctcaagagctgtcg
atgtcaatcgcagatccgttctcaatcgacgagaactaa
DBGET
integrated database retrieval system
