Aquaspirillum sp. LM1: BXU06_00965
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Entry
BXU06_00965 CDS
T04696
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aql
Aquaspirillum sp. LM1
Pathway
aql03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aql00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BXU06_00965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aql03021
]
BXU06_00965
03400 DNA repair and recombination proteins [BR:
aql03400
]
BXU06_00965
Enzymes [BR:
aql01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BXU06_00965
Transcription machinery [BR:
aql03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BXU06_00965
DNA repair and recombination proteins [BR:
aql03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BXU06_00965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
SopD
Motif
Other DBs
NCBI-ProteinID:
AQR63794
UniProt:
A0A1U9JI86
LinkDB
All DBs
Position
220112..224224
Genome browser
AA seq
1370 aa
AA seq
DB search
MSYSFTEKKRLRKSFAKRAGVLDVPFLLATQIDSYTEFLQLGVPFDKRESIGLEAAFRSI
FPIHSHNGYARLDFVHYVLGDPPFDVPECQLRGITFAAPLRARIRLTILDKESSKPVVKE
VRENEVYMGEIPLMTGNGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVSILMKALGYSEEQILAEFFSFDTFYLTEDG
VYMELVAERMKGEVAKFDIVAPDGKLIVQKDKRVTAKHIRDIQASGLTRVEVPADMLVGR
VLAKNVVNPDSGELLARANDEITDELLAKLDICDVKQVDVLYTNELDQGAFIAQTMRSDD
ILDQFQAKVAIYRMMRPGEPPTEDAVEALFQRLFFNEDAYDLSRVGRMKFNRRIGRDELV
GSGTLSNEDIIAVIKILVDLRNGRGEVDDIDHLGNRRVRSVGELAENQFRAGLVRVERAV
KERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAIYARTNEYGFLETPYRKVV
DSQVTDEIHYLSAIEEGRYVIAQANAELDDAGRLTDELVTCREKGETILAMPERVQYMDV
APSQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRAEKPLVGTGIERAVATDSGTT
VVARRGGLVEYVDANRVVIRVNDEEALAGEVGVDIYNMTKYTRSNQNTNINQRPIVKVGD
LVARNDVLADGASTDLGELALGQNMTIAFMPWNGYNFEDSILISERVVADDRYTSIHIEE
LQVVARDTKLGPEEITRDIPNLSERMQGRLDESGIVYIGAEVEPGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRIPTGMQGTVIDVQVFTREGIERDKRAQSIIDDELKR
HRLDLNDQMRIFEADAFSRIERLIIGKVANGGPKRLAKGTEISKEYLDSLPSKHDWFDIR
MAEEDVAKQLELMKESLIQKREEFDLKFDDKKRKLTQGDELPPGVQKMVKVYIAVKRRLQ
PGDKMAGRHGNKGVVSKILPVEDMPFMADGTPVDIVLNPLGVPSRMNVGQILEVHLGWAA
RGLGKQFNRMVQEQRSVGEVRAYLENLYNGSGKPEDIANLTDAEIMDLAHNLRRGVPFAT
PVFDGAKEEEIKHMLSLAYPDSDPISPRMGFNESKTQLQLYDGRSGEPFERRTTVGIMHF
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDVTGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLGLDIDLDRY
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcgtttactgagaaaaagcgtcttcgcaagagctttgcgaaacgtgccggt
gttctcgacgtccccttcctgttggcgacacagatcgattcgtataccgagttcctccag
ttgggcgtgccgttcgacaaacgcgagagcatcggtctcgaagcggcgtttcgttccatc
ttcccgattcacagccacaatggttatgcccgcctggactttgtccactatgtgttgggc
gacccgccgtttgacgtgccggaatgccaactgcgcggcatcacctttgccgccccgctg
cgcgcccgcatccgcctgaccatcctggacaaggaatcgtccaagccggtggtcaaggaa
gtgcgcgaaaacgaagtgtacatgggcgaaatcccgctgatgaccggcaatggctcgttc
atcatcaacggtaccgagcgggtcatcgtctcccagctgcaccgttcgccgggcgtgttc
ttcgagcacgaccgtggcaagacccacagctcgggcaagctgctgttctctgcccgtgtg
attccttaccgtggctcctggctggacttcgaattcgatccgaaggacctgctgtacttc
cgtatcgaccgccgccgcaagatgccggtgtcgatcctgatgaaggcactgggctatagc
gaagaacagatcctggctgaattcttcagctttgacaccttctacctgaccgaagacggc
gtgtacatggagctggtggccgagcggatgaagggtgaagtcgccaagttcgatatcgtc
gcgccggatggcaagctgattgtccagaaagacaagcgcgttaccgccaagcatatccgc
gacatccaggcttccggcctgacccgcgtggaagtgccggctgacatgctggtgggtcgt
gtgctggccaagaacgtggtcaacccggacagtggcgagctgctggcccgtgccaacgac
gaaatcaccgacgaactgctggccaagctggatatctgcgacgtcaagcaagtggacgtg
ctgtacaccaacgaactggatcagggcgcattcattgcccagaccatgcgcagcgatgac
atccttgaccagttccaggccaaggtggccatctatcgcatgatgcgtccgggcgaaccg
ccgaccgaagatgcggtggaagcgctgttccagcggctgttcttcaacgaagacgcctac
gacctgtcgcgtgtgggccggatgaagttcaatcgccgcattggccgcgatgaactggtc
ggctcgggcaccctgtccaacgaagacatcattgccgtgatcaagatcctggtcgatctg
cgcaatggtcgcggtgaagtcgatgacatcgatcacctgggcaatcgtcgggtgcgttcg
gtgggcgaactggccgaaaaccagttccgcgccggtctggtgcgtgtcgagcgcgcggtc
aaggaacgcctgaaccaggctgagtccgacaacctgatgccgcacgacctgatcaacgcc
aagccggtcagcgccgccatcaaggaattctttggctccagccagctgtcgcagttcatg
gaccagaccaacccgctgtcggaagtgacccacaagcgtcgcgtttccgccctcggcccg
ggtggtctgacccgcgaacgcgccggttttgaagtgcgtgacgtgcatccgacccactat
ggccgcgtctgcccgattgaaacgccggaaggcccgaacatcggcctgatcaactcgctg
gccatttatgcccgcaccaacgagtacggtttcctggaaaccccgtaccgcaaggtggtg
gacagccaggtgactgacgaaatccattacctgtcggccatcgaagaaggccgttacgtg
attgctcaggctaacgccgagctggatgacgctggccgcctgactgacgaactggtgacc
tgccgggaaaagggcgaaaccattctggccatgccggagcgcgtgcagtacatggacgtg
gcaccgagccaggtggtgtcggtggcggcatcactgattccgttcctggagcacgatgat
gccaaccgtgccttgatgggtgccaacatgcagcgccaggccgtgccttgcctgcgtgcg
gaaaaaccgctggtcggtaccggtatcgaacgcgcggtggccaccgactcgggcaccacc
gtggtggctcgccgtggcggtctggtcgagtatgtcgatgctaaccgggtggtgattcgc
gtcaatgacgaagaagcgctggccggtgaagtgggtgtcgatatctacaatatgaccaag
tacacccggtcgaaccagaataccaacatcaaccagcgtccgatcgtcaaggtaggcgac
ctggtagcacgcaacgacgtgctggccgacggtgcctcgactgacctgggcgaattggcg
ctgggtcagaacatgaccatcgccttcatgccgtggaatggctacaacttcgaagattcg
atcctgatttccgagcgcgtggtggctgatgaccgctacacctcgattcacatcgaagaa
ctgcaagtggtggcgcgtgacaccaagctcggcccggaagaaatcacccgtgatattccg
aacctgtccgagcgcatgcaaggccgtctggacgaatccggcattgtctacatcggtgcc
gaagtggagccgggcgacgtgctggtgggcaaggtgaccccgaagggcgaaacccagctg
accccggaagaaaagctgctgcgcgccatctttggcgaaaaagcctcggatgtgaaggac
acttcgctgcgcattccgactggcatgcagggcacggtgatcgacgtgcaggtgttcacc
cgtgaaggcatcgaacgcgacaagcgcgcccagtcgatcattgacgacgagctcaagcgc
catcgccttgacctgaacgaccagatgcggatttttgaagctgatgccttcagccggatc
gaacgcctgatcatcggcaaggtagccaatggcggtccgaagcgtctggccaagggcacc
gaaatcagcaaggaatacctggacagcctgccgtccaagcacgactggtttgatattcgc
atggccgaggaagacgtggccaagcagctggagctgatgaaagaatcgctgatccagaag
cgcgaagaattcgacctgaaatttgacgacaagaagcgcaagctgacccagggcgacgaa
ctgccgccgggcgtgcaaaagatggtcaaggtgtatatcgccgtgaagcgtcgtctgcag
ccgggtgacaagatggccggtcgtcacggtaacaagggtgtggtctccaagatcctgccg
gtggaagacatgccgttcatggccgatggtacgccggtggacatcgtgctgaacccactg
ggtgtgccgtcgcggatgaacgtgggccagattctggaagttcacctgggctgggcggcg
cgtggtctgggcaagcagttcaaccgcatggtgcaggaacagcgcagcgtgggtgaagtg
cgtgcctatctggaaaacctctacaacggtagcggcaagccagaagacatcgccaacctg
accgacgcggaaatcatggacctggcgcataacctgcgccgtggcgtgccgtttgccaca
ccggtgtttgacggggccaaggaagaggaaatcaagcacatgctgagcctggcgtatccg
gatagtgatccgatttcgccgcgcatgggctttaatgaatccaagacccagctgcaactg
tacgatggccgttcgggtgaaccgttcgaacgtcgcaccaccgtgggcatcatgcacttc
ctgaagctgcatcacctggttgacgacaagatgcatgcccgttccaccggcccgtactcg
ctggtgacccagcagccgctgggcggtaaggcgcagtttggtggtcagcgtttcggtgaa
atggaagtgtgggcgctggaagcttacggcgctgcctacaccctgcaggaaatgctgacg
gtgaagtcggatgatgtgaccggtcggaccaaggtttacgagaatatcgtcaagggcgag
cacaagatcgacgccggcatgccggaatccttcaacgtgctggtgaaggaaattcgctcg
ctgggtctcgacatcgacctggatcgctactaa
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