Ascochyta rabiei: EKO05_0009841
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Entry
EKO05_0009841 CDS
T09445
Name
(RefSeq) Superkiller protein 3
KO
K12600
superkiller protein 3
Organism
arab
Ascochyta rabiei
Pathway
arab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKO05_0009841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arab03019
]
EKO05_0009841
Messenger RNA biogenesis [BR:
arab03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
EKO05_0009841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_17
TPR_8
TPR_2
TPR_12
TPR_19
TPR_CcmH_CycH
TPR_14
TPR_7
TPR_16
TPR_11
TPR_6
TPR_Slam
ARM_TT21_C
TPR_9
E_motif
Coatomer_E
Motif
Other DBs
NCBI-GeneID:
62218261
NCBI-ProteinID:
XP_038795212
LinkDB
All DBs
Position
17:complement(join(1321893..1324917,1324972..1325129,1325243..1325485))
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AA seq
1141 aa
AA seq
DB search
MASHADSAHDLLDLDIGTLRQYVELFPTEGLSKVITGYLSSGISKYPLTQEKGDAPDLSE
GGVSLSVDLPVSQDDCLALMTEGILEARKSPLAHVLLGDFYLSLEEYESAVECTRKGLKL
AANEAKKTDLSFQRTRDALSSTLATALVYYQAPRNHLEAKQIFREILKRKPRFTAALIGL
GLILEEDEDYKEAAEFLEQALKQDPDNGRIGAEAAWCQALDGDYKAGLDKLEGYIDHPQM
DASNSRGRELRAQTLYRIGVCIWELDPSKAARKDRQGAYARLLAAIKANPNYAPAYTLLG
IFYEDYNKDRKRARQCFQKAFELSPSEIVAAERLARLFANQGEWDIVEAVSQRVVDSGKA
KPTPGSKKKGVSWPFSALGVVQMNKQEYQQSIISFLSALRISPDDYYSYVGLGESYHNSG
RYNSAQRAFNYAENPSDDVIMKKTDNESWFTKYMLANVNRELSEYDEALQGYEAVLSQRS
QEFGVSIALIQTLVEKGWHCIETGFYGEAVDSAIRAIEVAYTVTEYKPDAFNLWKAVGDA
CSLFSWVQEKLEKFPSADVERLLRSQSDVGVNFDTHKDIDNIGNDDLATFSSTEVSILTK
VLKASILAQKRAIASCEHDIHAQAVAWYNLGWTEYRAHVCLEQEGNDEQKLTAFLRAAMK
CFKRAIELEAGNSEFWNSLGVITTTLSPKVAQHAFVRSLHLNDRNVHVWTNLGTLYLLQN
DLHLADTAFGRAQAQDPDYALAWVGMGLVALLGGKESDAFAHFTHAFELSDSSLLLTKRQ
YAVSAFDFLVSSPSSSNTIVNLIQPLFALQQLNRQVPYDLSHKHLAALFLERVGNYDASV
AALQAVSEAAEQEYEKSEALPALARIVQAKNDLARNQLALGSNDSAVEEAETALDLMAEL
EGDTGQSILSAEQLDKIRLSARLTAGLAHYFSGALDAALPYFRTSLEATGSHPDIICLLA
EVLWAKGGDNERQVAREQLFTASEKHESHVGILTLVGAMTVLDDDLETMEVIKDDLDRLR
TDKTLTDEQLARIEKIVEAISISLGGADQELDEARRSVVLAPWKHTGWSELADAAGGDVF
ASTLAKETARRNAPPNGTLSAVGLASAMAATGDAGDAQRAIVLAPWSKDGWSGLVECLQS
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacatgcggacagtgcgcacgacctcttagatctcgacataggcacattgcgg
caatatgtcgagctcttcccaactgagggtttgtcgaaagttatcacaggatatctgagc
agtggcatatcgaaatatccactcacgcaagagaagggagatgcgccagatctgagcgaa
ggcggggtatccctcagcgtcgatctgcctgtctcacaagacgactgtctggccctaatg
acagaaggtattctcgaagccaggaagtcaccacttgcacatgtcttattaggcgatttc
tatctttccttggaagagtacgagagtgctgtcgagtgtactcggaaaggtttgaagctt
gcagcaaacgaagccaagaagacggatctgtcattccagcgcacacgtgatgcgctgagc
agtacacttgccacagcacttgtttactaccaggcgcctaggaaccacctggaagctaaa
cagatcttccgggagatactcaagcggaaaccaaggttcacggctgcgctgattggtctc
ggtctcatacttgaggaagatgaggattacaaggaagccgcggagttcttggagcaggcc
ctgaagcaagacccggataatggtcgcattggagcagaagcagcttggtgtcaggcactc
gatggcgattataaggccggactggacaagctcgaaggctatattgaccacccacaaatg
gacgcatccaactcacgcggtagagaattacgtgcacagactctataccggatcggtgtg
tgtatatgggagctcgacccttcgaaagctgcacgaaaggaccgacaaggagcttacgct
aggcttctcgctgcgatcaaagcaaacccgaactatgcacccgcatacactctgcttggt
atattctacgaggactacaacaaggaccgcaaacgagcaaggcaatgtttccagaaagcc
ttcgaactatctccgtccgagatcgttgcagctgagcggttggcccgactgttcgccaat
cagggtgaatgggatattgttgaggctgtctcacagagagtcgttgactctggcaaagca
aaaccaaccccaggctcaaagaagaagggtgtcagctggccgttctctgcattgggagtt
gttcaaatgaacaagcaagagtaccagcagagcatcatctcattcctgtccgctcttcgc
atcagcccagatgactactactcctatgtcggtcttggtgagagttaccataattctgga
cgctacaactccgcacaacgtgccttcaactacgccgagaatccatcagacgatgttatc
atgaagaagaccgataacgaaagctggtttaccaagtatatgcttgcaaacgtcaaccgg
gagcttagcgagtatgatgaagcactccaaggctacgaagctgttctttcccaacggtca
caagagttcggagtatcgattgccctcattcagacactcgtagaaaagggctggcactgc
atcgagaccggattctacggtgaagccgtggacagcgccatccgagccattgaggtcgcc
tacacagtcacagagtacaagcccgatgcatttaacctctggaaggcagtcggagatgcg
tgcagtttgttcagttgggtgcaggaaaagcttgagaagttcccttctgcagacgttgag
cgcttattgcgaagccaatcagacgttggcgtcaacttcgatacacacaaagacatcgac
aacattggcaacgatgatctcgctactttctcttcgacagaggtgtcaatcctcacaaag
gtattgaaggcttccattctcgcgcaaaagcgagctattgccagctgcgagcacgacatc
cacgctcaggctgtagcatggtacaaccttggctggactgagtaccgtgctcacgtctgc
ctggaacaggaagggaacgatgagcagaaactcacagctttcttgagagcagcaatgaaa
tgcttcaagcgcgccatcgagctcgaagctggcaactctgaattctggaactctctcggc
gtgataacgacgacactcagtcccaaggtcgctcagcacgcgttcgtacgttctctgcat
ctcaacgaccgcaacgtgcacgtctggacaaatctaggcacgctctacctactccaaaac
gacctccatcttgctgacacagcatttggacgcgcacaagcccaagaccctgattacgct
ttagcctgggtgggtatgggattagtcgcccttcttggtgggaaggagagcgacgcattt
gcgcacttcacgcatgcgttcgagttgtcagattcctcgttactcctgaccaagcgacag
tatgcagtctcggcgttcgacttccttgtgtcatcaccgtcatcttcgaacacgatcgtc
aatctgatacagccactgttcgctctccagcagctcaaccgtcaggtaccatacgaccta
tcgcacaagcatctcgcagcgctgttcctggagcgagtcggtaattacgacgcttcggtg
gccgctctacaggctgtttccgaagctgccgaacaagagtacgagaagtctgaggcttta
cctgctcttgcgcgtattgtccaagcgaagaacgatcttgcgcggaaccaacttgcgcta
ggttcaaatgactccgcggtagaggaggcagagactgcgttggacctcatggctgagctt
gaaggtgacactggccagtcgatcttgtctgccgagcaacttgacaaaatacggttgtcc
gctcgccttaccgccggtctcgcacactacttcagcggtgcacttgatgcagcgctacct
tacttccgcacatcgctcgaagccacagggtctcacccagacattatctgcctgctcgca
gaggtgctctgggcaaagggaggcgacaacgaaagacaggtcgcgcgtgaacagctcttc
accgcctccgagaagcacgagtcacacgtcggcatcctcacgctcgtcggcgcaatgact
gtcctagacgacgatctcgaaaccatggaagtcatcaaggatgacctcgaccgcctgcgc
accgacaaaacccttactgacgagcagcttgcacgcatcgagaagatagtcgaagccatc
tccatcagcctcggcggtgcagaccaagagctcgacgaagcgcgacgaagcgtcgtgctc
gcgccctggaagcacacaggctggtcagagctggctgatgcggctggtggcgatgtgttt
gctagtacgctcgcaaaggagactgctcgtagaaacgcaccgccgaacggcactctcagc
gctgtcggtctggctagtgctatggctgcaactggcgacgcgggtgatgcgcagagagcg
attgtcctcgcaccgtggagcaaggacggctggagcgggcttgttgagtgcttgcaaagc
gcctga
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integrated database retrieval system
