Agrobacterium radiobacter: ACN9MK_08075
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Entry
ACN9MK_08075 CDS
T11332
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
arai Agrobacterium radiobacter
Pathway
arai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACN9MK_08075 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arai03021
]
ACN9MK_08075 (rpoB)
03400 DNA repair and recombination proteins [BR:
arai03400
]
ACN9MK_08075 (rpoB)
Enzymes [BR:
arai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACN9MK_08075 (rpoB)
Transcription machinery [BR:
arai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACN9MK_08075 (rpoB)
DNA repair and recombination proteins [BR:
arai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACN9MK_08075 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
XRS27971
LinkDB
All DBs
Position
1:complement(1590183..1594319)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKLPVTSLLMALGMDGEEILSTFYTKATYER
AGDGWRIPFQPDALKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLVDKGLKALKATDE
DLYGNFLAEDIVNYETGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
LSVDKNQNRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIIDGKVTTDVIYLSAMEEAKYYVAQANAELDGEGAFTEEFVVCRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
DSGAAIAARRGGVVDQVDATRIVIRATEELDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
AVGDLISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGHVSIAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGEMLEEYRKTMDISELRTELTEIYASESHDEVQRFDDESLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQPDDQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagtttttcggcaaaatt
ccagaagtagcggaaatgccgaacctcatcgaggttcagaaggcttcgtacgaccagttt
ctcatggttgacgagcccaagggtggccgtcccgacgagggattgaatgccgtattcaag
tccgtattcccgatcaccgatttttccggcgcctccatgctcgaattcgtgtcctacgaa
ttcgaagcgccgaagttcgacgtagaggaatgccgtcagcgcgatctgacctatgcagcg
ccgctgaaggtgacgctgcgcctcatcgtgttcgatatcgatgaagatacgggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaat
aacggtacgttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtgttcttcgatcacgacaagggcaagagccattcttccggcaagctgcttttc
gctgcccgcgttatcccgtatcgcggttcctggctcgacatcgaattcgacgccaaggac
atcgtctatgcgcgtatcgaccgtcgccgcaagctgcccgtgacctcgctcctgatggcg
ctcggcatggacggcgaagaaatcctgtcgaccttctataccaaggctacctacgagcgc
gccggtgacggctggcgtatcccgttccagcctgacgcgctgaagaatgccaaggtcatc
accgacatgatcgacgccgacaccggcgaagttgttgtcgagggtggcaagaagctgacc
ccgcgccttatccgccagctcgtcgacaagggcctgaaggcgcttaaggcgactgacgaa
gacctctacggcaacttcctggccgaagacatcgtcaactacgagacgggtgaaatctat
ctcgaagccggcgacgaaatcgacgagaagacgcttggcctgatccttcagtccggcttc
gatgagattccggttctcaacatcgaccacgtcaatgttggcgcctacatccgtaacacg
ctctccgttgacaagaaccagaaccgccaggaagcgctgttcgacatctaccgcgtcatg
cgtccgggcgaaccgccgaccatggactccgcggaagcgatgttcaactcgctgttcttc
gatgcagagcgttacgatctctcggctgttggccgcgtgaagatgaacatgcgtctcgac
ctcgatgcggaagacaccgtgcgcacgctgcgcaaggaagacatcctcgccgtcgtcaag
atgctggtcgaactgcgcgacggcaagggcgaaatcgacgacatcgacaacctcggcaac
cgccgtgttcgttcggtcggcgagctgatggaaaaccagtatcgtctgggccttctgcgc
atggaacgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggcagctgccgccgttcgcgaattcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgtcgtctt
tcggctcttggaccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtt
cacccgacccactacggccgtatttgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgccacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcatcgacggcaaggtgacgaccgacgttatctacctctccgccatggaa
gaggccaagtactacgtcgcacaggccaatgccgaactcgatggcgaaggcgccttcact
gaagagttcgtcgtctgccgtcactcgggcgaagttatgctcgcaccgcgcgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcggcggctctcattccgttc
ctggaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggccgtt
ccgcttctgcgggcggaagcgccgttcgtcggcacaggcatggaaccgatcgttgcccgt
gactccggcgctgccatcgcggctcgccgcggcggtgtcgtcgaccaggtcgatgcgacg
cgtatcgttatccgcgctacggaagaactcgatgccggcaagtcgggcgttgatatctac
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
gccgtcggcgatctcatctccaagggtgacatcatcgctgacggtccgtcgaccgacctc
ggtgacctggcgctcggccgtaacgcgctcgtcgcgttcatgccctggaacggctacaac
tacgaagactcgatcctgatgtcggaacgtatcgtttccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacacgaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtt
tacatcggtgcggaagttcagccgggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgttcgcgacacctccatgcgcatgcctccgggcacgtttggtaccgttgtggaagtc
cgcgtcttcaaccgtcacggtgtggagaaggacgagcgcgcgatggcaatcgagcgcgaa
gagatcgaacgtctggcgaaggaccgcgacgacgaacaggcaattcttgaccgtaacgtc
tacggccgcctgatcgacatgctgcgtggtcacgtttccatcgccggtccgaagggcttc
aagaagggcgtcgagctttccaacgctgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaggacgaaaaggctcagtccgaactggaagcgcttcgcggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgatgaaatgcctccgggcgtcatgaagatggtcaaggtctttgttgctgtgaagcgc
aagatccagccgggcgacaagatggccggccgtcacggtaacaagggcgtcgtctcgcgt
atcgttcctgtcgaggacatgccgttcctcgaagacggcacgcatgtcgacatctgcttg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccacctcgca
tgggcatgcgcaggcatgggcaagaagatcggcgagatgctcgaagagtatcgcaagacg
atggacatcagcgagcttcgcaccgagctcaccgaaatctatgcgagtgaatcgcatgat
gaggtgcagcgcttcgatgacgaatcgctggtcaagcttgccgaagaagccaagcgcggt
gtttccatcgcgacgccggtcttcgacggtgcgcatgagcctgacgtcgctgcgatgctg
aagaaggcaggtctgcatgaatccggtcagtccgttctttatgacggccgtaccggtgag
ccgttcgaccgcaaggtcaccgtcggctacatgtacatgatcaagctgaaccaccttgtt
gacgacaagatccacgctcgctcgatcggtccttactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggacagcgcttcggggaaatggaagtctgggctctggaa
gcatacggcgcggcttacacgctgcaggaaatgctcaccgtcaagtcggacgacgtggcg
ggccgcaccaaggtctacgaggcgatcgtccgtggtgacgacacgttcgaggccggcatt
ccggagagcttcaacgttctcgtcaaggaaatgcggtcgctcggtctttcggtcgaactg
gaaaactcgaagatcgagaaccagcccgacgaccagctgcccgacgcggcggaataa
DBGET
integrated database retrieval system
