Athalia rosae (coleseed sawfly): 105691905
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Entry
105691905 CDS
T09776
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aroa
Athalia rosae (coleseed sawfly)
Pathway
aroa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aroa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105691905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroa03019
]
105691905
Messenger RNA biogenesis [BR:
aroa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105691905
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105691905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105691905
NCBI-ProteinID:
XP_012266140
LinkDB
All DBs
Position
3:14993667..15004084
Genome browser
AA seq
2403 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRESAQEISVLVQWKGLEADRHLLRCLFSHVDFSTG
EHPEPNAKDYYQTQLLAQECINLLSKPSLISNLCYAIDRPLHQQKSLNPTPKFFVNLRKV
VKLTSIQEVAFAIALLHSENPDIQSLALEHIKKQLPDLIRNYINSEISNKHHEGGLHDSS
PEVLHLILSQAFHEPNQFGLPVEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEILQST
IELNMASNAMDGSGLVEMIMELGYSFTSSVDECRSALAGLGAREITPTAAARVLSLMART
CSGLDNAGGLQSFWGSSAANQDSNKDKSSDGSTPTTWNVEVFVQTLKDLQSTLSWNEIIV
KLDHAEFIIKDRPGLNLLMTGLRLGLQHLGYPLDMFPVELFYRHWDNVEGQFSLIQQVLK
NPDIFCFADFPYHSVTVDVLKAAPEGDSKEAGTWRSLNVVELLLHMAERGLYSAVQEIFK
WPIQHCPDVLVLALLQINPPITILRQELLSTLMPIFLGNHPNSAVILHHAWHANSVAIKP
IIMHAMAEWYLRGEYDQTRLSRILDVAQDLKALSMLLNAQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGELFVAACVKFLQRRCPQVMGPAMKEDPSAPKATQLPQETLTTILACLQ
VCAGSVSQECSDAIMTMVQNCNLMLSKASLSRPPPVHRHRGLEPFNPATLGGQLFSSSQV
DPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPLMPLS
SQLHSGPVGTQGPSVVPGGTTIGGLSRLGPPSGIEKARLPETSNLFPDMTQNVSKEIEDE
ANSYFQRIYNHPPHPTLSIDEVLEMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQYPD
KELHITAQLFGGIIERGLVNTYVALGLALRCVLDALRKPEGSKMYYFGIAALDRFKSRLK
EYQKYCEHVRAIQHFSEFPPHLIEYVEYGLQGQEPPTRPQGQVLPKTLAAMLAPATIPYK
TITTTTVTTTTTQAKPSTTPTTSLSARPSIANATNIDTLLVATDKEEKITSPPESLQDKT
AFIFNNLSQNNLQQKCDEIRDIVTEEYWPWMAQYLVMKRASIELNFHTLYSNFLDCLKVP
EVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNNPIFHIDIDLKS
LLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKLNL
KFEIEVLCKNLSIDVAELKPAIYLKDPEKLRNLEYQLSHPNKKPEPVGNPLPPQPPPEEL
VRPATTGTMIPQQQAPPVNTTPSLPTSPPEPRFNYMDISVTGIANISQHITINNQLPLFQ
AHPHLKQFVRSAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEIRMRTAARHM
VRNLTAGMAMITCRDQVLASISTNLKQSFVAALMGTTPQQKELAEQAATIVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALFIPKPITEPAAVTPFAANPAVAVPTAQQVAAY
AAAVNNDEVGAMLEKLATEVELLLAAMGPGVPPPQHAALHTLLESIILTRRSRDTGAAMA
LLKKAVEGLLDGPSISTGINDGEVMLRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTE
CREEFRYNFEAVDCLIRSHLLSLPQFDFALAQAMDAGAAMATAFAMQLIQLYLIDERQTT
HVTESDLFHTIEILARMAHHRAPPEGISLFRLTSLIESLRANHDPAVLADRAPAGPTAHI
HSGILQVRARDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNIHGILK
TDDLITRFFKLSTQMCVDLCYRALGEPNAAPSVVRAKCFHTLDAFVRLVALLVKHSGDTA
NTHTKINLLNKVLGIVAGVLLQDHEMRGTDFQQLPYHRIFVMLFLELCAPEPVLEAVNYQ
VLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKY
LAPYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILS
AFPRNMRLPDPFTPNLKVDMLQEIVLAPRVLSNFASMIQPLSFKKELDSYLKARAPVTFL
SGLRSNLQVSQEAGMRYNIQLMNALVLYVGTQAISFIRSKGHTPNMSTIAHAAHMDIFQN
LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPTYNFWKHEFVHCAPEIEKLFESVARSCMVQKQVQPPPEPE
IPE
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgccaattta
aacaagaaaaattttcgagaaagcgctcaggagatatcagttttggtgcagtggaagggt
ctggaggcggacagacacttgctgcgctgtttgttctcgcatgtcgacttctcaacagga
gagcatccagaacccaacgctaaagactattatcaaacccagttgctcgcccaagagtgt
atcaatctactcagcaaaccctcccttatttcaaacctttgctacgctatcgatcgtccc
ttacatcagcaaaaaagcttgaaccccactcctaaattttttgtaaatcttcgcaaggtt
gtgaagttaacttctatacaagaagttgcatttgccattgcactattgcattctgaaaac
ccagatattcagagcttggctttggaacacataaaaaagcagttaccagatctaataagg
aattacattaactctgaaataagtaataaacaccacgaaggaggcttacacgattcctca
ccggaggtcttacacctcatcctctcacaggcatttcacgaacctaatcagtttggtttg
cctgttgaagcaaaggaaaaatttctcaagaatctacggcgtgactttccccgtgagctg
gtaccggtggtgctagcaccactcttgtatccaggcgacggggaaattctgcaatctacc
atcgagttaaacatggcctccaatgcaatggacggcagtggacttgtggagatgattatg
gagctcggatacagcttcaccagcagcgtcgatgaatgtcgttcagcgttggctggtctg
ggcgcccgagaaattacacccacagcagctgctcgggttttatcacttatggcacgtacg
tgttcgggcttggacaatgcaggtggtttacagtcattctggggcagttctgccgctaat
caagattccaataaagataaatcatcagacggcagcacacctacgacatggaatgtcgaa
gtttttgttcaaacattgaaagacctgcaatccacgttatcatggaatgaaataatcgtg
aaacttgatcatgctgaattcattatcaaagacagaccgggattgaatctattgatgaca
ggtctgcgtctaggacttcaacacttaggatacccactggatatgtttcctgtagaatta
ttttaccgccactgggacaatgttgagggccaattctccctgattcagcaagttcttaaa
aatccagatatattttgttttgctgatttcccctatcattccgtaactgtcgatgtgctc
aaggctgccccagaaggtgacagtaaggaagcgggaacatggagatctcttaatgtagtc
gagctccttttacacatggccgagcggggcctctacagtgctgttcaagaaattttcaaa
tggcctatacaacattgtccagatgtccttgttctggctttacttcagattaatccaccg
ataacgatactgcgacaagagttgctcagcacgttgatgccaatttttcttggaaatcat
cctaattctgcggtgattctacatcacgcttggcacgcaaacagcgtcgccattaaacca
ataataatgcacgctatggcggaatggtacctacgtggagaatacgatcaaacaagatta
tcacgaatcttggatgttgctcaggatctgaaagctctttcaatgcttctgaatgcacag
tccttcccatttgttattgatctcgcatgtctagcctccagaagagaatatttaaaattg
gaaaagtggctgacggacaaaatcagggatcatggagaattatttgtagccgcttgtgta
aaattcttgcaacgaagatgtccccaagtcatgggacctgcgatgaaagaggatccttca
gctccaaaagccactcaactccctcaagagacgctaactacaattcttgcctgcctgcaa
gtctgcgctggaagcgtttctcaagaatgttccgatgcaatcatgacaatggttcagaac
tgcaatttgatgctaagcaaagcaagcctaagcagaccgccacctgttcatagacacaga
ggactagagccattcaatcctgcaactttgggaggacagctattctcctcctcgcaagtt
gatcctctcggaaatctaagttcaagtttagcttctatgggcttgggttcaagtcttgga
ccacctagcagttctgccttcaatctcccaggagcacttggacctttggtatctgctcct
ggttccccgtcacgattaatgggtccttcacccagcccttttcctctgatgccactttcc
tcacaacttcattccggacctgttggtacacaaggaccatcggttgtaccaggtggcacc
acgataggaggcctgagtcgtcttggcccacccagtggcattgagaaagccagattaccc
gagacctcaaatctctttccagatatgacgcagaatgtgtcaaaggaaatcgaagatgaa
gcaaatagctattttcaacgtatttacaatcatccgccccaccccactctttcgatcgat
gaagtccttgaaatgctcaagaagttccaggattccggcagcaaaagagaacgcgaggtg
ttcaactgtatgctacgcaacttgtttgaagaatatcgtttcttcccgcagtatcccgat
aaggaattacacataaccgctcaattattcggaggtattatcgagagaggactagttaat
acttacgtcgcattaggactagcactacgttgcgtacttgatgccttgagaaagccagag
ggtagtaaaatgtattacttcggaatcgccgctctcgatcgattcaaaagtcggctcaaa
gagtatcagaaatactgcgaacacgtcagagcgatccaacatttcagcgagtttccacca
catcttatagagtatgtggaatatggcctgcaaggtcaagaacctcctaccagacctcag
ggtcaagttcttccaaagaccttagcagctatgctagcaccggctacaatcccctataaa
actattacaacaacaactgtcactacaacgactacccaagctaagccatctacgacaccc
actacatcactatcggctagaccatccattgctaatgctacaaatatagacactctactc
gttgcaacggataaagaagaaaaaataacatcgccaccagaaagcctacaagacaaaact
gcattcatcttcaacaatttgagtcagaataatttacaacaaaaatgtgatgagattcga
gatattgtcacggaagaatactggccctggatggcccagtatttagtaatgaaacgtgct
agcattgaattaaatttccacacactttactcgaacttcctcgactgcttgaaagtccca
gaagttaacaaaatggtaaccagagaaactttcaggaatattaaagtactgctacgaagt
gacaaagggatagccaatttttctgaccgttctttgttgaaaaacttgggtcattggctg
gggatgctcacgctaggaagaaataatccgatttttcacatagacatagatttgaaaagt
ctacttgtcgaggcttaccacaaaggtcagcaagaacttctatatgtggtaccatttgtt
gctaaagtgttggaaagttgtgctaagagtcgggtttttcgtccccctaatccttggacc
atggcgataatgaacgttctagcagaattgcatcaagagcctgacctcaaacttaatctt
aaattcgaaattgaagtgctttgcaaaaacctgagcatcgatgtcgctgagctcaagcca
gccatctatttgaaagatcctgaaaagttaagaaacttggaataccaattatctcacccg
aacaaaaaaccagaacctgtaggaaacccactgcccccacaaccaccccctgaagaatta
gttagacctgcaacgactggaactatgatcccgcaacaacaggcaccacctgttaataca
acgccatcgctgcccacaagtccgccagaaccacgtttcaattacatggatatatcggta
actggcatcgccaatatttcccaacacatcacaattaacaatcagctaccgctgttccaa
gcacatccacatctcaagcagtttgtgaggtccgctgttgaacgtgcaatccaagaatgg
attcatcctgttgtagatagatctattaaaatagccttgaccaccagcgaacagatagtt
cgtaaagattttgctttggacccagaagaaatcagaatgcgaaccgctgctcgtcacatg
gtgcgcaaccttactgccggaatggccatgataacttgtcgtgatcaggtactcgcatcg
atcagtacaaatttgaaacaatctttcgtcgctgctctaatgggcaccacacctcagcaa
aaggaactcgccgaacaggctgctactatcgttgccgctgataacatggaacttgcatgt
gcatttgtccaaaaaacagcgattgaaaaagcgattcctgaaatggataagcgactgttg
aacgaaatcgaactacgtaaaattgccaggcaagaaggaaggaggtattgtgatccctta
gccaaatatcaggctgagcgaatgcctgaacaaataagactgaaggtcggaggcgttacc
ccacagcagatggctgtttacgaagaatttgccaggaacattccagggttcttacctctt
tccgaacgtgacacccaggctctctttatccccaaaccaattactgagcctgctgcggta
acgccattcgcagcgaatcctgcagtcgcagttcctacagcccaacaagtcgccgcatat
gcggcagccgtgaacaatgacgaagtgggtgcgatgctagaaaaactcgctacagaagtt
gaactacttttagctgcgatgggacctggagttcctccaccccaacatgctgcgttacat
actctccttgagtccatcatacttactaggaggtctagagataccggtgctgctatggcg
ctactgaaaaaagctgtagaaggtttgctggatggtccgagtatttcaacgggaataaac
gacggagaagtaatgctgagatacagagaattacatttacgaatactcaagtgccttcaa
gatccgcgtgcttatggcatgcaatggacaaacaaacatgtcacacgatgtcttacggaa
tgcagagaagagtttcgttacaatttcgaagctgtggattgtctgatcaggtctcatcta
ttgagtctcccacagtttgactttgctttggctcaggcaatggacgccggtgcagccatg
gctacagcgtttgccatgcaattgatacaactctatctcatcgacgagcgacaaactact
catgttaccgaatctgacttgttccatacgatagagattctagccagaatggcacatcat
cgagcgccacccgaaggaatttctctattcaggctcacaagtttaattgaatcattgcgc
gcgaatcatgatccagccgtactggccgacagagcccctgccggacctaccgctcacatt
cactccggaattctgcaagtgcgggcgcgtgacttcgatgaccctcctggcttaatggaa
aaaacggaatacttgttacgggaatgggtatccatgcaccataatccgacacatgctcgt
gatccgacgaaggcattcggaatgtttgttcatcagatgaacattcatgggattttaaag
accgatgatctaatcacgagattcttcaaactcagcacgcaaatgtgcgtcgacttatgt
tacagagcattgggagaaccaaatgccgcgccttccgttgtacgtgccaaatgtttccat
accttagatgctttcgtgcgtctcgttgcactcctggtaaaacattcgggagatactgcc
aatacgcacacgaaaataaaccttctaaataaggttcttggtatcgtagcgggagttctt
ttgcaagatcatgagatgcgaggaactgatttccagcagcttccttatcacagaatattc
gtaatgctgttcttggaattatgtgctccagaaccagtacttgaagccgttaattaccaa
gttcttaccgccttttgccacactcttcatatactacgcccagcaaaagcatcaggattt
tgttacgcctggttagagttggtttcgcatcgagtcttcattggacgtatgctcgccatt
actcctcaacaaaaatgctggggcatgtacgctcaactgcttatcgatcttttcaagtac
ttagctccttatcttcgcaatgccgagttagccaaaccggtcactctgctttacaaaggt
acgctacgtgtactgctggtgttgctacatgacttccctgaatttttatgtgactatcac
tacggattctgcgacgttatacccccgaattgtattcaaatgagaaacctaatactcagc
gcttttccgagaaatatgcgactgcccgatccctttacgcctaatttgaaagtggacatg
ttacaagagatcgttctcgcaccaagagttctgtcaaattttgcttcgatgatacaacca
cttagtttcaaaaaagaattagattcttacctaaaggcgcgggcacctgtgactttcctt
tctggattgcgtagcaatttacaagtctcgcaggaagcaggaatgcgctataacattcaa
ctgatgaacgcccttgttctatacgtcggaacacaagctatatcattcattcgtagcaaa
ggacacactccaaatatgtcgaccatagctcatgctgcccatatggatatattccaaaat
ttagctgtcgatctggacacagaaggacgatacctattcttaaatgcaatcgccaatcag
ttgcgttatcctaatagtcacacgcactacttcagctgcacgctattatacttgttcgcc
gaagctaacaccgaagctattcaagaacaaataaccagagtccttcttgaaagactgatc
gtcaacagacctcatccttggggactcctgatcacattcatcgaactcatcaaaaatcct
acgtacaacttctggaagcatgaattcgttcactgtgcaccggaaatcgaaaaattgttc
gaatcggtggctcgatcgtgtatggtacagaaacaagttcagccaccgcccgagccagag
atcccggagtga
DBGET
integrated database retrieval system
