Amycolatopsis roodepoortensis: NQK81_12470
Help
Entry
NQK81_12470 CDS
T08507
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aroo
Amycolatopsis roodepoortensis
Pathway
aroo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aroo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQK81_12470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aroo03019
]
NQK81_12470
03400 DNA repair and recombination proteins [BR:
aroo03400
]
NQK81_12470
Enzymes [BR:
aroo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQK81_12470
Messenger RNA biogenesis [BR:
aroo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQK81_12470
DNA repair and recombination proteins [BR:
aroo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NQK81_12470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
AAA_22
GCV_T_C
DUF8096
Motif
Other DBs
NCBI-ProteinID:
UUV34221
LinkDB
All DBs
Position
2669195..2671300
Genome browser
AA seq
701 aa
AA seq
DB search
MDTSTLRDRAETLLQSLAGEGARLRDDQWTAIEALVAHRRRALVVQRTGWGKSAVYFLAT
ALLRERGNGPTVIISPLLALMRNQISAAARAGIHAATMNSANPQEWDQVQAAIAAGEVDV
LLVSPERLNNPDFRDTVLPKLTATAGLLVVDEAHCISDWGHDFRPDYRRLRTLLKDLPDG
VPVLATTATANDRVATDVAEQLGIGNGGDTLVLRGSLDRESLHLSVAKLPTSQARLAWLA
EHLAELPGSGIIYTLTVAAAHDVAGLLTERGYPVAAYTGKTDPADRQAAEDDLLNNNVKA
LVATSALGMGFDKPDLGFVVHLGAPSSPIAYYQQVGRAGRGVDRAEVILLPGHEDKDIWA
YFGSLAFPDELRVTQVLNALAYADRPLSTPALEPFVELSRSRLEMVLKVLDVDGAVRRVK
GGWEGTGEEWRYDKERYARVSAARTNEQNAMLAYLETTGCRMEFLRKQLDDPEATPCGRC
DNCTGRHWDTTISDDVVDATRQRLRRPGVEVAPRKMWPTGMAGLDVPLSGRLPAGEQAET
GQVVGRVTDVGWGTRLRELVGPAAADTELPEPVFQACIEVLKGWQWTERPVAVVEVPSAT
RPQLVHSLATKLASIGRLEYLGAIASAGPPPRQANSAQRLADLWKRLSLPEDLSARVAAA
DGPILLVDDLIDTGWTMTLSARLLRQAGARAVLPFALASTS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtggacacatcgactctccgggatcgcgccgagaccctcctccagtcgttggcgggcgag
ggcgcccgcctgcgtgacgaccagtggacggccatcgaggcgctggtcgcccaccgccgt
cgcgccctcgtcgtgcagcgcaccggctgggggaagtccgcggtgtacttcctggccacc
gcgttgctgcgagagcggggcaacggcccgacggtgatcatctcgccgctgctcgcgttg
atgcgcaaccagatctccgcggcggcgagggccggtatccacgcggcgacgatgaactcc
gcgaacccacaggagtgggatcaggtccaggcggcgatcgcggcgggcgaggtcgacgtc
ctcctggtcagcccggagcggctcaacaaccccgatttccgcgacaccgtcctgccgaag
ctgaccgcgaccgccggcctgctcgtggtcgacgaggcgcactgcatctcggactggggc
cacgacttccgcccggactaccggcggctgcggaccctgttgaaggatctgcccgacggt
gtcccggtgctcgccaccaccgcgaccgcgaacgaccgcgtggccaccgacgtcgccgag
cagctcggcatcggcaacgggggcgacaccctcgtcctgcgcggcagcttggaccgcgaa
agtctccatctgtcggtggccaagctgccgacgtcgcaggcccggctcgcctggctggcc
gagcacctggcggagctgccgggttccggcatcatctacacactcaccgtcgccgcagcg
cacgacgtcgcggggttgctgaccgagcgcggctacccggtcgccgcctacaccgggaag
accgacccggcggaccggcaagcggccgaagacgacctgctgaacaacaacgtcaaggcg
ctggtggccacttcggcactgggcatgggcttcgacaagccggacctgggcttcgtggtc
catctcggtgcaccgtcctccccgatcgcctactaccagcaggtcggccgtgccgggcgt
ggcgtcgaccgcgccgaagtgatcctgttgccgggccacgaggacaaggacatctgggcg
tacttcggctcactggccttcccggacgagcttcgggtgacgcaggtgttgaacgccctg
gcgtacgcggaccgtccactgtcgacaccggcgctcgaaccgttcgtcgagctttcccgg
tcccggttggagatggtcctgaaggtgctggacgtcgacggcgccgttcgccgggtgaag
ggcggctgggagggcaccggcgaagagtggcgctacgacaaggagcgctacgcacgagtc
agcgcggcgcggaccaacgaacagaacgccatgctggcttacctggagaccaccggctgc
cggatggagttcctgcgcaagcagctcgacgatcccgaagccactccctgcgggcggtgt
gacaactgcaccggaaggcattgggacaccacgatttccgacgacgtcgtcgacgccacc
cggcaacggctgcgccgtccgggggtcgaggtcgcgccgcggaagatgtggccgaccggg
atggccgggttggacgtcccgctctccgggcggctgccggcgggcgagcaggccgagacc
ggccaggtcgtcggccgggtgaccgacgtcggctggggcacgcggctgcgcgaactcgtc
ggcccggccgcggcggacaccgaactccccgaaccggtcttccaggcctgtatcgaggta
ctcaagggctggcagtggacggaacgccccgtggcggtggtggaagtaccttccgccacg
cgacctcagctggtccacagcctggcgacgaagctggcctcgatcggacgcctggagtac
ctgggcgccatcgcctcggcggggccaccgccgcgtcaggcgaacagcgcgcaacggctg
gccgatctgtggaaacgcctcagcctccccgaagacctgtcggcgcgagtggccgcggcc
gacggcccgatcctgctggtcgacgacctcatcgacaccgggtggacgatgacgctgtcc
gcacggctgctccgccaggccggagcccgtgcggtgctgccgttcgctctcgccagcacc
tcgtaa
DBGET
integrated database retrieval system
