Anguilla rostrata (American eel): 135240821
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Entry
135240821 CDS
T10705
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
arot Anguilla rostrata (American eel)
Pathway
arot04510
Focal adhesion
arot04512
ECM-receptor interaction
arot04518
Integrin signaling
arot04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arot00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135240821
04518 Integrin signaling
135240821
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135240821
09142 Cell motility
04820 Cytoskeleton in muscle cells
135240821
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arot04147
]
135240821
00536 Glycosaminoglycan binding proteins [BR:
arot00536
]
135240821
Exosome [BR:
arot04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135240821
Glycosaminoglycan binding proteins [BR:
arot00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135240821
Hyaluronan
Extracellular matrix or blood plasma proteins
135240821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
135240821
NCBI-ProteinID:
XP_064166855
LinkDB
All DBs
Position
15:23397837..23463620
Genome browser
AA seq
3159 aa
AA seq
DB search
MRKRWFLSFCALLCVAISGLVPDTHAQDDGRPALAADIYFLVDSSWSIGQENFQYVRQFL
FSAVKTLSEWSDGFRFALVQYSGSPKTEFRLNTYQAPQDVLAHIRSLAYRGGGTRTGRGL
DFLIKNHLTVASGSRAAEGVQQVVVVLTDGRSQDDVAPPSSVLKMAGVDVFAVGVQDAAM
WELREMASAPLDMHVYNVDSFTALSNIVQDLVVNLGAAAGFPVAAEATGIIQDVTAQESA
DLVFLIDGSENVGAANFPQVRDLALSIVERLDVGRDAIRVAVILYSADPEVQFYLNSYDS
KTAVMDAIKGLSFTGGEEANLGAALQEVADTLLTPQAGGRSEDGVPQAVVVISAGASSDD
LSLGDRALKQASVFVFGVAAGDESTVQLEGIATDRSFVLSAPSVNTVATLGDQLLPYING
VAQRTIVLHTEVIEDVAVGSRDIIFLIDGSQNMGGTLFNAVREFIKKFVDIMPIGPDQVQ
VGVAQFTNTPKLEMDLNTHSTKESLSTAVGKMRIKGGTQEVNIGAALDFVRTQMLRADKG
SRIGQEVPQLVLLFSAKKASDTVAQQAMELHRMGVLTMAAGSKNADEEELKTIAFHKSLV
FMLKDFRGLIRNPTVLISPLSTISGVVVTEPPTDSIEITTVETQRIIRDIVFLVDGSDYV
GEAGFAHVRDFISRIVDRLDVRPGRVQIALMQFAREQRTEFYLSTYNNKKDVLDAVARIR
PMGGDVIYTGAALEFALENLFQPSAGSRRRQGVPQAVVLITGGPPQDEVKRVADKVAVEG
VLTYTVGAGQVDENILKTVAFVPTLAYYVSRFDDLTSVVENIMTPLITVVGDTDTIITEV
ETTEGKRDVAFLIDGSDAVGSDFQYIKDFILNVIEPLNVGIDNVRVAVVQHSERPSPSFY
LDTYKTKEDVSLAINTMRLAGGRTLNTGEALKFMKDTVFSAERGSRAAQNVPQFLIVLTA
GKSRDNVRGPAGALKTEGVLPFGVGVRDADQSQIAAISHNPSFAFTVKEFSQLNRVQKQL
GSFVTLSEENLKTVIEQGDSQGPKKDVVFLVDGSDATRQQFTVIQEFIRRVVENLNVGEN
KIRIGVVQYSDAASGDIYLNSHTTKEGVLNAIKGLRHRGGRQRNLGRAIEFVSRDVLDPT
RGGRRPDGVPQFVIAVSGGRSSDDITGPATKLKQSGVVPFSIGTRDVGSQELQMVSYVPT
YAYTIDNFPGLFTIQDGLISTLTELSDEEIRILQPHYPTVSQPGDKRDVVFLIDGSTTVR
SEFPNIRDMIGRVVDKLDVGLDKVRVSVVQYSEEPKVEFLLNEHSTPEELRGAVRKIRNK
GGNRLNTGRALDWVSKNIYQRSAGSRIEEGVPQFLVLVTGGKSSDDVSGPANQLKLSPIA
PLAIGSRNANADELRLISLKPEYAFTVTDFQELPNIEQRLLAPVKTLTTTDIISVRTPVD
VGNIPLGKKDIIFLIDGSDSVGSSGIAHIRDFILKVLQQLDISSDQVRVGVVQYSDSQQT
QFSLNSFDKKPDVLAAVKRLRLMGGRSANLAEAIDYVLQNELKQSAGVRPSEASQHLVVL
TGGRSPSDVSPYGPLLKERRVNCIGVGAGAADSRQLSQIATSPADVLQIPSFPGLAGIQD
RFFTRLSSKGPTGDIEPTDFDDTGLSPKVADIVFLVDGSINLGRDNFKEVMEFIMNLVDL
FFTERDNLQIGLAHYAADVTDVFYLNTYKNKNDIVDAITRTEYRGGQRLNTGAAIKYVQG
THFTKEKGSRKDEGVPQILMLIKGGKSNDDGKSAALGLQKAGVRIYAVGVGDIEDELSSL
GSEATTVHRARTFQELSELNEQILQTLDDDVKGQKHCTAEQEPTRVCKVEVLVGFDVSAQ
NIFSAQRSLESKMGAILQRIMQMQAISCTSGQAPSVQVGILAMDSASEPVQLDFTGDHAQ
LFDSFKALRTRGPYVLNAKTIDAYTARFRNRATDVVRVVIHLTDGLDGQFAQMKERIEAL
RVSGVNSFILVGLERVPRFEDAVLLEFGRGFRYTKPLRVNLLDLDYELMEELDNIAEREC
CSVPCKCTGQRGDRGAVGASGPKGGPGGEGYRGHPGDEGGPGERGPPGVNGTQGFQGCPG
QRGVKGSRGYSGEKGEFGEIGLDGINGEEGTSGVAGPPGDRGNPGSRGPKGAKGQAGDQG
ETGLRGDPGVTGEDNKKRGPKGDPGDVGPVGEAGSNGEQGGPGEPGRRGADGRRGPPGQP
GPAGKPGADGVEGEPGIGGSRGPPGPMGTPGTRGEDGNPGPRGAGGPSGGPGEKGRRGSV
GRKGEPGDPGPKGVAGPLGPRGEPGDDGRDGFGIPGPKGRSGDEGFPGFPGPKGAAGDPG
PQGGPGPRGNRGQRGVAGNPGDPGQKGDVGYPGPHGLKGPRGPGVVQCELVKKIRDNCPC
CYGAQECPLYPTELAFALDVSDGTAGAAFDNMRKAVLKLLGGITISESNCPRGARVALTL
YNQEVTTEVRFADALKKSSLLQRIEGLQPLQTRKPRSLENAMNFLAQNTFKRVRSGFLMR
KVAVFFVNGAVKTSPAFSAAALRLYDAGIASVFITNREDRSLSQALKVNNTVLAQVIALP
APSNAQYNSAIEKIMSCHICLDFCTPSPVCDFIPPSSTRDRRSFTTDLDIDVAFVMDSSQ
STWPAVFMEMKRYIAHIIDQLQIASDPKTSVNHARVAVVQHAPYEFSANGTGAPVRVDID
LTDHGSKEDIMDFLHDKVTQLEGSLSLGNAIEYTIENVFEKAPHHRDLKLIVLMVTGPVW
PQDEEKLVRLATEAKCKGYFLVILGVGEHLGVTDARILARMASEPASVFFKRINGATQFY
DPHIQRFGLLLPKYISMEHAFYMSPEVSKNCQWYLSDQPWKFPFKHAQKKEEHQKHHVNQ
VVHPAKSKEVDTEELHVANVTSSSLRLRWSSSDSKGVARYEVTVMRLSDHSLALQKNVTG
TELLLEGLESAQNYQVVVVVYAQGKPVHTHKGIVSTKAAEKKTVAPAEVTATLSTAPLDK
PELANENADPCALDFDFGMPCKDYKAKWFFDKKHGICTQFWYGGCGGNANRFETEAQCMR
RCLKTSPEPQADEQQEETSDPPAPAALFGVNICQLPKEEGSCAKFVLKWHYDFPSKSCTR
FWYGGCGGNQNRFDTQEECLKTCGTAVPGQQNTMAAMRT
NT seq
9480 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacgctggttcttgtcgttttgcgctcttctttgtgtggcgatctcaggcctg
gtccccgacacccatgctcaggatgatggcagaccagcgctggctgcagatatatacttt
ctagtggattcatcgtggagcattggacaagagaattttcagtacgtcagacagtttctg
ttcagtgcggtaaagactctgagcgagtggagcgatgggttccgcttcgccctggtgcag
tacagcggctcccccaaaacggagttccggttaaacacgtaccaggccccgcaagacgtc
ctggcccacattaggagcctggcgtaccgggggggaggcacccgaacggggcggggcctg
gatttcctgataaagaaccacctgaccgtggcgtccggcagccgggccgcagaaggggtc
cagcaggtggtggtggtccttacggatgggcgttcccaggacgacgtggccccgccctct
tccgtgctgaaaatggccggcgtggacgtgtttgcggtgggggtgcaggacgcggcgatg
tgggagctcagggagatggctagcgcgcccctggacatgcacgtgtacaacgtagacagt
tttaccgccctatcgaacatagtccaagacttagttgtcaatctgggtgcggctgcaggt
tttccagtggcagctgaagccactgggataatacaagatgtgacagcacaagagtcagct
gatcttgtattcttaattgatggatcagagaacgttggggccgccaacttcccacaagtc
cgggatttggcactcagcatcgttgagaggcttgatgtgggaagggacgccatccgtgtg
gccgtcattctgtatagtgcggaccctgaggttcagttctatcttaatagttacgacagc
aaaacggctgtcatggacgccatcaaggggcttagcttcacgggcggagaggaggccaac
ttgggggcagctctccaggaggtcgccgataccctcctgaccccccaagcggggggtagg
tcggaagacggggttccgcaagctgtcgtggtaatcagcgctggagcatccagcgacgat
ctcagtttgggtgacagggccctaaagcaagcgagtgtttttgtttttggcgtggccgct
ggcgatgaaagcaccgtgcagctggaaggtattgccacggacaggagctttgtgttgtcg
gcgcccagtgtcaatactgtggccactctgggggaccagctgctgccatacattaatggg
gtggcgcaacgcaccattgtcttacacaccgaagtgatcgaagacgtggccgttgggagt
agggacatcattttccttatagatgggagccagaatatgggtggcaccctcttcaatgcc
gtccgtgaattcatcaaaaagtttgtcgatatcatgcccattggacctgatcaggtacag
gtgggtgtagcccagttcaccaacacccccaagctggagatggacctgaacacgcacagt
accaaagagtcccttagcactgcagtcgggaagatgcgcataaagggcggcactcaggag
gtcaacattggggctgccctggatttcgtcaggacccagatgctgcgggctgataaaggg
agccgcatcggccaggaggtgccccagctggtgctgctcttctcagccaagaaggccagc
gacaccgtcgcccagcaggccatggagctccaccgaatgggcgtcctgaccatggctgct
ggctccaagaatgcagacgaggaggaactgaagacgatcgctttccacaagagcctggtc
ttcatgctgaaggacttccgcggactgatccgcaaccccacggtgctcatctctccgctc
tccacaatctccggagttgtcgtgactgagccaccaacagattcaattgaaataacaacg
gtggagacccaacgcatcatcagagatattgtcttcttggtggacgggtctgactacgtt
ggagaggccggtttcgctcatgtgcgtgacttcatctcccgcatagtggaccggctggac
gtgcgcccaggcagggtgcagattgctctgatgcagtttgcaagggaacagcgcacagag
ttctacctgagtacttacaacaacaagaaggatgttctggatgccgtggctcggatcagg
ccaatgggaggtgatgttatttacacaggggcagccctagagtttgccttggaaaacctc
tttcagccatcagctgggtccaggagaagacaaggggtcccgcaggcagtagttctcatc
actggaggcccacctcaagatgaagtcaaacgggttgccgataaggtagcagtggaggga
gttctgacctacacagttggtgctggccaggtggatgaaaatatcttgaaaactgttgcc
tttgtgcccaccttggcttattatgtgagcagattcgatgacctgacaagtgttgttgaa
aacatcatgacacctttaatcacagtggtgggagacacagacactattatcaccgaagta
gaaactactgaaggcaagagggatgtggcatttctcattgatggctctgatgctgtcgga
agtgatttccagtacatcaaggacttcattctgaatgttatcgaacctctcaacgttgga
attgataatgtgcgggttgctgtggttcagcacagtgagaggccctcacccagtttttac
ctggacacttacaaaaccaaagaggatgtgtctttggccatcaacaccatgagactggct
ggcggtcgaactctgaacacaggggaagctctgaaattcatgaaggacacggtcttttct
gcagaacggggcagcagagcagctcagaatgttccccagttcctgattgttctgactgca
ggaaaatcaagggacaatgtgagaggacctgctggggcactgaagacagaaggagtcttg
cccttcggagtgggggtgagggatgcagaccagagtcagattgcagcaatctcccacaat
ccttcctttgcattcacggtgaaggaattcagccagcttaacagggttcagaagcaactg
gggagtttcgtcaccctttccgaagagaacttgaagacggtgatagagcaaggtgacagc
cagggtccaaagaaggatgtcgtctttctggttgatggttccgatgccaccaggcagcaa
ttcacagtcatccaggaattcatccgcagggtcgtggaaaatctcaacgttggagagaac
aaaatccggattggtgtggtgcagtacagtgatgctgcaagtggggatatctacctgaac
tcccatacgaccaaggaaggcgtcttaaatgccataaaaggcctgagacacagagggggt
aggcagcgtaatttggggagggctatagagtttgtcagccgggatgtattagaccccaca
cgtggaggcagaagaccagacggcgtcccacagtttgtgattgcagtctcagggggcaga
tcttcagatgatattacaggtccagccacaaaattaaaacagtcaggggtggtgccattc
agtattggaaccagagatgtaggttcccaggagcttcaaatggtttcctatgttccaaca
tacgcttacactattgataatttccctggcctatttaccattcaggacggactcatctcc
actctgacagaactgtcagatgaagaaattaggattttgcaaccccattacccaacagtt
tcacagcctggagacaagagggatgtggtcttccttattgatggatccactacagtgcgt
agtgaattcccaaacatccgggatatgatcgggagggttgtagacaagctggatgtaggc
ctggacaaggtgagggtctctgtggtccaatacagtgaagaacccaaggtggagttcctc
ctcaatgaacattccactccggaggaattgcgaggagcagtgcggaagataaggaacaag
ggaggaaacagactgaacacaggccgagctttggactgggtgtccaaaaacatctaccag
aggtcagctggcagcaggatcgaagagggggtcccgcagttcctcgtactggtcaccggg
ggcaagtcctcagacgacgtctcgggtccagccaatcagctgaagttaagcccgattgct
cctcttgccattggaagcaggaatgccaacgctgatgagctgcggctcatatctttgaaa
cctgaatacgccttcacagttacagattttcaagaactccccaatattgagcaacgcctg
ctggcaccagtgaaaaccttgacaacaacagatataatttccgttcgtactccagtggac
gtgggtaatatcccgcttggaaaaaaggacattattttcctcattgacggatcagacagt
gtgggctccagtggtattgcccacatccgggacttcatactgaaagtgctccagcaactg
gatattagttctgaccaggtccgcgtgggcgttgttcagtacagcgacagccagcagacg
cagttctctctcaactcctttgacaagaagcctgacgttctggcggcggtgaagaggctc
cgcctcatgggtgggcggtctgccaacctggccgaagccatcgattacgtgttacaaaac
gagctcaagcaatcggcgggtgtcaggccatctgaggcctcccagcacttggtggtgctc
accgggggtcggtccccatcagacgtctcgccttatggcccgctgctcaaggaaaggcgg
gttaattgcataggagttggtgccggtgcggctgactccaggcagctgtctcagattgcc
acctccccagcggatgtacttcagattcccagtttcccagggctggccggtattcaggac
aggttctttaccaggcttagtagcaagggacctacaggtgacattgaacccacagatttt
gatgacacaggtttatcccctaaagtagccgacattgtatttttggtggacggttcaata
aaccttggcagagacaatttcaaagaagttatggagttcatcatgaaccttgttgaccta
tttttcacggagagagacaacctgcagattggcctggctcattatgctgcagacgtgact
gacgtgttttaccttaacacctacaagaacaagaatgacatcgttgatgccatcaccagg
acggagtacagaggaggtcagaggctcaacaccggtgccgccattaagtacgttcagggg
actcatttcaccaaggagaagggaagcaggaaagatgagggcgtgccccagatcctgatg
ctcattaagggcgggaagtctaatgacgacgggaagtcggctgccctgggtctccaaaag
gctggtgttcggatctacgccgtcggggtgggcgacattgaggacgagctttccagcctg
gggagtgaggcaaccactgtgcacagagccagaactttccaggagctctctgaacttaac
gaacagatcttgcagactctggacgatgacgtgaagggccagaaacactgcacagcggag
caagagcccacaagggtctgcaaggttgaggtgctggtgggttttgacgtgtcagcacag
aacatctttagtgcccaaaggtctctggaatccaaaatgggtgccatcctccagaggatt
atgcagatgcaagccatcagctgcacatctggacaggctccctctgtgcaggtcggcatc
ctggccatggactccgcctccgaacccgtccaattggacttcacaggagaccacgcccag
ctttttgactccttcaaagccctccgcacccgcggcccttacgtcctcaatgccaagacc
attgatgcctacaccgccagattccgcaacagagccacagatgttgttagagttgtgata
cacctgacagatggtctggatggacagtttgcgcagatgaaggagcgtattgaggctctc
cgtgtttcaggtgtgaacagtttcatcctggttggcctggagagagttccccggtttgaa
gatgctgtgctgcttgagttcggccggggcttccgctataccaaacctctgcgtgtcaac
ctgctggacctggactacgagcttatggaggaactggacaacattgcagaaagagaatgc
tgctcggtgccatgcaagtgcactggacagaggggggatcgaggagctgttggagcttct
ggacctaagggtggacctggaggggagggctacagaggacatcctggagatgaaggcggc
cctggtgagagaggtcccccaggtgtgaatggaacccagggattccagggctgtccagga
cagaggggagtcaagggatctcggggatactccggagaaaagggagaatttggagaaatc
ggtctggatggaatcaatggggaggagggaacaagtggagtggcaggacctccaggagac
agaggaaacccaggaagtaggggtcctaaaggtgctaaaggccaggctggagatcaagga
gagactggccttagaggagacccaggtgtaactggagaagacaacaaaaagagaggacca
aagggtgacccaggcgatgtcggaccagtgggagaagcaggatcgaatggagagcaaggt
ggccctggtgaaccaggcaggaggggtgctgatgggaggagaggtccccctggacaacct
gggcctgctgggaaaccaggagctgatggtgtggagggagagccaggcattggagggtct
cggggcccgcctggaccaatgggaactccaggaaccagaggggaggatgggaaccctgga
cccaggggtgctggaggaccttcaggaggtcctggtgaaaagggtagaagaggatctgtt
ggccgcaagggtgaaccaggagatcctggtcctaaaggtgtggctggacccctgggacct
cgcggagagcctggtgatgacggcagagatggctttggaatccctggacctaaaggaaga
agtggtgacgaaggattcccagggttccctggtccgaagggtgcagcgggtgacccaggc
cctcagggaggcccaggtccaagaggaaaccgtggacagcggggtgttgctggtaatcct
ggtgatcctggtcagaaaggggatgttggataccctggacctcatggcctgaaaggacca
agaggacctggcgtggtgcaatgtgaattggtgaagaagatcagagataactgcccttgc
tgctatggcgctcaggagtgcccgctgtaccccactgagctggcattcgccctggacgtg
tcggacggcacagccggcgcagccttcgacaacatgaggaaagcggtgctcaagctgctg
ggcggcatcaccatctccgagagcaactgcccccggggggcgcgggtggccctgaccctg
tacaaccaggaggtgaccacggaggtgcgcttcgccgacgcgctgaagaagagcagcctg
ctgcagcgcatcgaaggcttgcagccccttcagacccgcaagccgcgcagcctggagaac
gccatgaacttcctggcccagaacaccttcaagcgcgtgcgcagcggcttcctcatgcgc
aaggtggccgtcttcttcgtcaacggtgccgtcaagacctccccggccttcagcgccgcc
gccctccgcctatacgatgccggcatcgcctccgtcttcatcacaaaccgcgaggaccgc
tcgctctcccaggccctgaaggtcaacaacactgtgctggctcaggtcattgctctcccc
gctcctagcaatgcacagtataactcagccatcgagaagatcatgagctgccatatctgt
ctggacttctgcacacccagcccggtctgtgacttcatccccccttcatcgacgagagac
agacgctccttcaccactgacttggacattgatgtggccttcgtgatggacagctctcag
agcacctggcccgcggtcttcatggagatgaagcgctacatcgcccacatcatcgaccag
cttcagatcgcctccgaccccaagacctcggtaaaccacgcccgtgtggcggtggtccag
cacgccccctacgagttcagtgccaatggcaccggtgcccccgtacgggtggacatagac
ctgaccgaccacggctccaaggaggacatcatggacttcctgcatgacaaggtgacccag
ctggagggctctctgtcgctgggcaatgccatagagtacactatcgagaacgtgtttgag
aaggccccgcaccaccgcgacctgaagctcatcgtgctgatggtgacgggtcctgtctgg
ccacaggatgaggagaagctggtgcgcctggccactgaggccaagtgcaagggctacttc
ctggtaatccttggtgtgggcgagcacctgggtgtcactgacgcccgcatcctcgctcgc
atggccagcgagcccgccagtgtcttcttcaagaggataaatggcgccacccagttctac
gacccgcatattcagcgctttgggctcctccttcccaaatacatcagcatggagcacgcc
ttctatatgtctcctgaagtttccaagaactgtcagtggtacctgagtgaccagccctgg
aaatttcccttcaaacacgcccaaaagaaagaggagcatcagaagcaccatgtgaaccag
gttgtgcatccagctaagagcaaagaagtggatacggaggaactacacgtggccaacgtg
acgtccagcagcctgaggctccgctggtccagctccgacagcaagggtgtggcccgctat
gaggtgaccgtgatgcggctgagcgaccactccctggccctgcagaagaacgtgacgggc
acggagctcctgctggagggcctggagagcgcacagaattaccaagtggtggtggtcgtg
tacgcgcagggcaagcctgtgcacacgcacaagggcatcgtcagtaccaaagcagctgag
aaaaagacagtggctcctgccgaagtgactgctactctttccactgctccactggacaaa
ccagagctagctaatgaaaatgcagacccgtgcgcacttgattttgacttcggaatgcca
tgcaaagactataaggctaagtggttctttgacaaaaagcacgggatctgtacccagttc
tggtatggtggttgtggagggaatgccaataggttcgagactgaagcccagtgcatgaga
cgctgcttgaaaacatcaccagaaccccaggccgatgagcagcaggaagagacctcagac
ccacctgccccagctgcccttttcggggtgaacatctgccagctccccaaggaagagggt
tcatgtgcaaagtttgtcctcaagtggcactacgacttccccagcaagagctgcacccgc
ttctggtatggaggctgcggaggcaaccagaaccgcttcgacacccaggaggagtgcctg
aagacctgcgggacagcagtgcctggccagcaaaataccatggcagcaatgagaacatag
DBGET
integrated database retrieval system
