Arthrobacter sp. PGP41: C3B78_14295
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Entry
C3B78_14295 CDS
T05450
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
arth
Arthrobacter sp. PGP41
Pathway
arth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
arth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C3B78_14295 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arth03021
]
C3B78_14295 (rpoB)
03400 DNA repair and recombination proteins [BR:
arth03400
]
C3B78_14295 (rpoB)
Enzymes [BR:
arth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C3B78_14295 (rpoB)
Transcription machinery [BR:
arth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C3B78_14295 (rpoB)
DNA repair and recombination proteins [BR:
arth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C3B78_14295 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AUZ36693
LinkDB
All DBs
Position
complement(3131080..3134589)
Genome browser
AA seq
1169 aa
AA seq
DB search
MVASSTSNNETANTADSTDGATRRLSFAKIHEPLDVPNLLALQTDSFDWLVGNERWQARV
AKAVEENDLSVATTSGLSDIFEEISPIEDFQGTMSLSFSDPEFADPKYTMAECKDRDATY
SAPLYVKAEFMNNNTGEIKQQTVFMGDFPLMTEKGTFVVNGTERVVVSQLVRSPGAYFER
AADKTSDKDIFTAKIIPSRGAWFELEIDKRDQVGVRLDRKRKQSVTVLLKALGWTEGQIL
EEFGQYDSMRATLEKDATETREDALLDIYRKLRPGEPPTVEAAQSLLDNLYFNSKRYDLA
KVGRYKINRKLGIDRSLGDKEASVLHVEDIVAMIKFLVALHAGEKTIKGTRDGQEVDLRV
EIDDIDHFGNRRIRAVGELIENQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVA
AIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCP
IETPEGPNIGLIGSLASYGRINPFGFIETPYRLVKDGVVSDDVQYLTADDEAEVLIAQAN
APLDENKKFAEETVLVRARGGGGEPVLVPAADVEFMDVSPRQMVSVATALIPFLEHDDAN
RALMGANMQRQAVPLVRSEAPFVGTGMERAAAVDAGDVVIAKKAGVVTEVSAELVIMLND
DGTETNYRINKFARSNQGNCYNHRVLVNEGQRLEVGGIIADGPATDQGELALGKNLLVAF
MSWEGHNFEDAIILSQRIVAEDVLSSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLAG
LDERGIIHIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGE
SGTVIGVRVFDRDNDDELPPGVNQLVRVYVAAKRKITDGDKLAGRHGNKGVISKILPVED
MPFLADGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKTGWKIEGEPEWVKQLPNLPRES
GQTTVATPVFDGAREEEITGLLDSTNVTRDGERLINSSGKTRLFDGRSGEPFPDPISVGY
MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE
LLTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSTDGTTIEM
RDSDDAVFTAAEELGIDLSRAEPSSVEEV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgcctcgagcacctctaataacgaaaccgctaacaccgccgacagcactgatggt
gccactcgccggctctcattcgcaaagattcacgaacctcttgacgttccgaatctgctt
gccctccagacggacagcttcgactggctggtcggaaatgagcgctggcaggcacgcgta
gcgaaggctgtcgaagaaaacgatctcagcgtcgccactacgtccggcctgtcggacatc
ttcgaagagatctccccgatcgaggacttccagggcaccatgtccctgagcttctccgat
ccggagttcgctgaccccaaatacaccatggccgagtgcaaggaccgggacgctacatac
tcggctcccctgtacgtcaaggccgagttcatgaacaacaacacgggcgaaatcaagcag
cagaccgtgttcatgggtgacttcccgctgatgaccgagaagggcaccttcgtcgtcaac
ggcaccgagcgtgtcgtcgtctcccagctggtccgttctccgggcgcctacttcgagcgc
gccgccgacaagaccagcgacaaggacatcttcaccgcgaagatcatcccgtcccgcggc
gcctggttcgaactggaaatcgacaagcgcgaccaggtcggcgtgcgcctcgaccgcaag
cgcaagcagtccgtcacggtcctgctcaaggccctcggctggaccgaaggccagatcctc
gaggagttcggccagtacgactccatgcgggcaaccctggagaaggacgccaccgaaacc
cgcgaagacgcgttgcttgacatctaccggaagctgcgcccgggcgagccgcccaccgtc
gaggctgcccagtcgctgctggacaacctgtacttcaactccaagcgctacgatctggcc
aaggttggccgctacaagatcaaccgcaagcttggcatcgaccgctcccttggcgacaag
gaagcttcggtcctgcacgttgaagacatcgttgccatgatcaagttcctcgtcgcgctg
cacgccggcgagaagaccatcaagggcacccgcgatggccaggaggtggacctgcgcgtc
gaaatcgacgacatcgaccacttcggcaaccgccgcatccgcgccgtcggcgagctcatc
gagaaccaggtccgcaccggcctgtcccgcatggagcgcgttgtccgcgagcgtatgacc
acccaggacgtcgaggccatcacgccgcagaccctgatcaacatccgccccgtggtcgcc
gcgatcaaggagttcttcggaacctcccagctctcgcagttcatggaccagaacaacccg
ctctcgggcctgacccacaagcgccgcctgtccgcgcttggccccggtggtctgtcccgt
gaccgcgccggcatggaagtccgtgacgtgcacccgtcccactacggacgtatgtgcccc
atcgaaacccctgaaggcccgaacatcggcctgatcggttcgctggcttcctacggacgc
atcaacccgttcggcttcatcgagaccccgtaccgcctggtcaaggacggcgtcgtttcc
gacgacgtccagtacctgacggccgacgacgaggccgaagtgctgatcgcccaggccaac
gcgccgctggacgagaacaagaagttcgccgaagagaccgtcctggtccgtgcccgcggt
ggtggaggcgagcctgtcctcgttcccgccgcagacgtcgagttcatggacgtttccccg
cgccagatggtgtccgtggctaccgccctgatcccgttcctcgagcacgacgatgccaac
cgcgcactcatgggtgccaacatgcagcgccaggccgtgccgctggtccgttccgaggct
ccgttcgtgggcaccggcatggagcgcgcagcagccgtcgacgccggtgacgttgtcatc
gcgaagaaggccggtgtggtcaccgaggtttccgccgagctcgtcatcatgctaaacgac
gacggcaccgagaccaactaccgcatcaacaagttcgcccgctccaaccagggcaactgc
tacaaccaccgtgtcctggtgaacgaaggccagcgcctggaagttggcggcatcatcgcc
gacggtccggcaacggaccagggcgagctcgccctcggcaagaacctgctcgtggcattc
atgtcatgggaaggccacaacttcgaggacgccatcatcctctcgcagcgcattgttgcc
gaggacgttctttcctccatccacatcgaggagcacgagatcgatgcccgcgacaccaag
cttggtgccgaggaaatcacccgtgacatccccaacgtgtccgaggaagtcctggcgggc
ctggacgagcgcggcatcatccacatcggtgccgaggttgaagccggcgacatcctggtc
ggaaaggtcaccccgaagggtgaaaccgagctgaccccggaagagcgcctgctgcgcgcg
atcttcggcgagaagtcccgcgaagtgcgcgacacctccctgaaggtgccccacggcgag
tccggcacggtcatcggcgtgcgcgtcttcgaccgcgacaacgacgacgagctgcccccg
ggcgtcaaccagctggtccgcgtctacgtcgctgccaagcgcaagatcaccgacggcgac
aagctcgccggccgccacggcaacaagggtgtcatctccaagatcctccccgttgaggac
atgcccttcctggccgacggtacccccgttgacatcgtcctgaacccgctgggtgttccg
ggccgtatgaacgtgggccaggtgctcgagacgcacctcggctgggttgccaagaccggt
tggaagatcgaaggcgagcccgaatgggtcaagcagctgccgaacctgccgcgcgagagt
ggccagaccactgttgcaacgccggtgttcgacggcgcccgcgaagaggaaatcacgggc
ctgctcgactccaccaacgtgacgcgtgacggcgaacgcctgatcaactcctccggcaag
acccgcctgttcgacggccgctccggcgagccgttcccggatccgatctcggtcggctac
atgtacatcctgaagctccaccacctggtggacgacaagatccacgcgcgctccaccggc
ccgtactccatgatcacgcagcagccgctgggtggtaaggcacagttcggtggccagcgc
ttcggtgaaatggaagtgtgggcgctcgaagcttacggcgccgcctacacgctccaggag
ctcctcaccatcaagtctgacgacatccatggccgcgtgaaggtatacgaagccatcgtc
aagggcgagaacatccccgagccgggcgttcccgagtccttcaaggtcttgatcaaggaa
atgcagtcgctgtgcctgaacgtggaagtcctctccacggacggaaccacaattgaaatg
cgtgactctgatgacgcagtcttcacggctgcggaggaactgggtatcgatctgtcccgt
gcagagcccagttccgtagaagaggtctaa
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