Luidia clathrata (European starfish): 117289308
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Entry
117289308 CDS
T10152
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117289308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arun03019
]
117289308
Messenger RNA biogenesis [BR:
arun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117289308
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117289308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Nup49_C
Motif
Other DBs
NCBI-GeneID:
117289308
NCBI-ProteinID:
XP_033626268
LinkDB
All DBs
Position
4:21778533..21830010
Genome browser
AA seq
2582 aa
AA seq
DB search
MNLDSHSLALSQVTNLVGNLSKKSYKQSVAEISRLVSQQGPEGDRHLLRCLFSYVDFSGD
GKTAAKEFHQLHIQLLIQECTTLFTKPNFVCTLCHALDNPLHQQKSLKPSTQLFSQISKV
LKLSRVQEVVLGLALTHSSKADTRSHALQFVKHKLPDLLRSYIDSDIRSPQEGGLADVSA
EVLHLLLTHLLHSSKDQLGIVAPQREAFLKTIKKDFPPDQVPVVLVPLLYSDTQDIGMDR
IVNDNTNLPKAVMDGSLADMMQEMGYSCCATMDECRKSLLQFGTTSLSASAVARVISMMG
RTHSTLTDSMPLQSITGSSVWSDGKDKADPNSQPSTWNVDVFVEVIKDLAPHLNFREVIH
ELDNPGFLLNDVQGLRIVKNAFLRGLPDVFPVEVLYRVWKNTDGQLSWIQLALANPEVFC
FADYPCHTVVIDILKAPPEEDNREVATWKSLDLVETLLKLAEAGKYDQVKSLFGFPIKHC
PDMLLLALLQVQPIWTPLRHELISTLMPIFLGNHPNSAIVLHYAWHGQGQSPTIRQIVMH
SMAEWYMRGENDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWM
TDKIREHGEPFVQTCVTFLKRRAPQVIGGLEPQPKELPGGGKTGVLPPETIGTMLACLQA
CASSVAPELAETIMTMVANCSSLLKSRPPPGVIKSQVGISSLSPGIGPQMEGISGMSGLG
NTTPSNPGIHNFPNNPLSSAFGNIQSSAAAASQKPFPPLGATTMSGSSLGGGSLVGGGSL
GTGSLGTSGLGGGGLGSGLGSGLGSSAFGGGLGGGSGSSLAGGFGSSSSSGFGTGNGSAL
GGGFGGSSAAAFGSGSGSSLGGGFGSSLGGGLGGGLGGGLGTGGLGGGLGGGLGGGFGSS
LGGGLGGGLGGGLGGGLGGGLGGGLGGGLASLTGGANLQSNPHELRGSSALPPVGGDPFN
RQPVGSTPGSGFGNQTQPAINQPAKSNTGAIKPSDISNIWPELSQTFPPEIDEEANGYFQ
QIYNQPPNPVMSVDEVLQMLKQFKDSQVKKEREVFMCMLRNLFEEYKFFPQYPERELLIT
ACLFGGIIEQGLVTYMALGIALRYVLEALRKPFGSKMYYFGIAALDKFKTRLKDYPQYCQ
HLSAIQHFNEFPQLLTEYVQFGVMSREPPQRVPTPSSTVITAASSTTATEVTTPVSAVNA
PATSATTTSTATITKPLTKGGTQAPSIANTTNIDTLLVATPKDEVINEPPEAIQDKVAFI
FNNLSQSNQPQKCEELRELMSDEYLDWLSQYMVMKRASIEMNFHPLYSNFVDQIKKGQLN
DLLVKETLRNIEVLLSSDKSDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDLDMKSLIL
EAYHLGQQELLYVVPFVAKVMESCSKSRVFKPPNPWTMAIMGVLVELHQEPNLKLNLKFE
VEVLCKNMGLEPKDVKTYNYLTDSSQLRHLHEKLTGAKKAGEEQPLTQPPMQQQQQQQQQ
PSVQPNTSTPIPSSTAGSMASLVTDTMPTPTLSTVTTPAVAPTAGGAPAAQQSAAPIPQF
SFHDLNTSSLAGLAPHIAINAQIPLFQQHPQLRSCVRPMLERAVQELVHPVVDRSIKIAL
TTCEQIVRKDFALDPEENRMRIAAHHMVRNLTAGMAMITCREPLLTSISNMFKSACITAL
KGGTPQTKELIDQAANVVATENVELACCFIQKCAVEKAIPEMDRRLATEIELRKHARNEN
RRYCDPVVLTYQAERMPEQIRLKVGGVPAGQIAVYEEFARSIPGFQPTLEASQPPGFLVK
PMQQSYATDEITQIYDKCVSEIEQHLHALIQSSAQNQHMQVLHTLLEAVVLARNSREIVT
ALALLQKAVEGILEGYTPQTMDPELALRYRDCHILVLKSLQDQRAYGPQWTNKQVTRVVC
ETRGDHKYNLDAVEQLFRAHLINMQTFDMQLAQSMENGLNYTAVSFAMNLVRRYLIEEKQ
SNILNEADLYNTLHILARIASQTPNPPDGLQHLIEVVRQNHDPAFLDKAPGGPTSMMHSG
ISQAREFDDPPGLREKTEYLLREWVSMYHSPASGKDSTKAFSAFVNQMHQQGILKTDDLI
TRFFRICTELCVDLCYRALSEQAHTPTLTRAKCFHTLDAFVRLIALLVKHSGDASNAVTK
INLLNKVLGIVAGVLLQDHEVRHTEFQQLPYHRIFNMLLLELNAPEQILEAINYQIMTAF
CNALHVLRPSKAPGFVYSWLELISHRIFIARMLAMLPQQKQGWPMYAQLLIDLFKFLAPF
LRNAELPKYTALLYKGCLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPR
NMRLPDPFTPNLKVDMLTDITQPPRIMTNFSAMIQPATFKKDLDSYLKTRSPVTFLSELR
SHLQVSQEPGQRYNTALMNALVLYVGSQAIAYIHSKGSTPSMSTITHSSHMDIFQNLVVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAMQEQITRVLLERLIVNRP
HPWGLLITFIDLIRNPSFKFWNHEFVHCAPEIEKLFESVARSCMQQKGQAPAMNREAGEA
LD
NT seq
7749 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcccactcgttggccttgtctcaagtcacgaaccttgtgggcaattta
tcgaagaaaagctacaagcagagtgtggcagaaatatcccgtcttgtcagccagcagggg
ccggagggggacaggcatctattgcgttgtctcttctcttatgttgacttcagcggtgat
ggtaaaactgccgccaaagaattccatcagctgcatattcagttactgatacaagaatgt
actacactctttaccaagcctaattttgtttgtactttgtgccacgcccttgataacccc
cttcaccaacagaagagtctaaagccatccactcagctcttctcccagatcagcaaagtc
ttgaagctgagtcgagtgcaggaggtagtcctaggtctagctctcacgcactcctccaaa
gcagacaccagatctcatgctttgcagtttgttaaacacaagctgccagacttattgcgg
tcatatatagatagtgacatcagaagcccccaagagggcgggcttgcagacgtatctgca
gaggtccttcaccttctccttacgcacctgttacacagctctaaggatcagttaggtatc
gtagcaccccaacgagaagcattcctcaaaacaatcaagaaagactttcctccagaccag
gtgcctgtggttctagtgcctctgctgtacagcgacacacaggacatcgggatggatagg
attgtcaacgataataccaacctacccaaggcagtgatggacggctccttggcggacatg
atgcaggagatgggctacagctgctgcgccaccatggacgagtgtcgtaaatctctcctc
cagttcggcaccaccagcctatctgcatcggcagtggccagagtcatcagcatgatgggc
agaacacactccaccctcacagatagcatgcccttacagtctatcaccggcagcagcgtc
tggagtgacggcaaggacaaagcagaccccaactcccagccgagcacctggaatgtagac
gtctttgtcgaggtcatcaaggacctggctccccatctcaacttcagggaggtgatccat
gagctggataacccgggtttcctgctgaacgatgtacagggactgcgcatcgtcaagaat
gccttcctccggggcctgccggacgtcttccccgtggaggtgctgtacagggtctggaag
aacacagacgggcagttatcatggatccagctggctctagccaaccctgaggtcttctgc
ttcgctgactatccttgtcatactgtcgtcatagacatcctaaaggcgcccccggaggaa
gataacagagaggtggccacatggaagtcactggatcttgttgagacccttctgaagctg
gctgaggctggcaagtacgaccaagtcaagagtctgtttgggttccccattaaacattgt
ccagatatgctgcttctagctctacttcaagttcagcccatctggactcctctacgtcat
gagctcatctcaacattgatgccgatcttcctgggaaatcatcctaactctgccatcgtg
ttgcactacgcatggcatggacagggtcagtcgccaaccatccgtcagatcgtgatgcac
tcgatggcagagtggtacatgcgcggagagaacgatcagacacgactgtctcgcatcctg
gacgtagcccaggacctgaaggccctctcaatgctcctcaacgccacaccgtttgccttt
gtcatcgacctggcttgccttgcatcaaggcgagagtatctcaaactggataagtggatg
actgataagattagggaacatggggagccgtttgttcagacgtgtgttacattcctgaag
cgtcgtgcccctcaggtgatcggtggccttgagcctcaaccaaaggaactacctggggga
gggaagacgggtgtgttgccccctgagaccatcgggaccatgctggcgtgtcttcaggca
tgtgcaagttcagtagcgcctgagttagcagagaccatcatgacgatggtggctaattgt
tccagtctactcaagtccagacccccaccaggtgtcatcaaatcccaggtggggatatcg
tcactgtcgcctggcatcggaccacagatggagggaataagtggaatgtctggtctgggc
aacacaactccatccaatcctgggattcacaacttcccaaacaacccactcagctctgct
tttgggaacatccagtcatctgctgcggcagcaagccagaaacccttccctcctctaggg
gctaccacgatgagtggcagctccctgggtggtggttccttagtcggcggtggatcctta
ggaactgggagtttaggaacgagcggattagggggaggtggactcggatcaggcctcgga
tcaggcctcggatcgtcggcattcggcggcggtctcggcggaggctcaggaagtagcctc
gcaggtggattcggaagcagctccagcagcgggttcggtaccggcaacggaagcgcactc
ggaggtgggttcggaggaagctcagcagctgcatttggatcaggatcaggctccagtcta
ggaggagggttcggcagcagcttaggaggtggtctaggcggcggactcggaggcggattg
ggtactgggggattaggaggagggctcggtggggggctaggaggtggattcgggagcagt
cttggaggaggtcttggaggtggacttggaggtggactaggaggtggtttgggaggtggc
ctcggtggaggtttaggaggcggtctcgccagcttgactggaggcgctaaccttcagtct
aacccacatgagctccgagggagtagtgccttgcctccagtgggtggcgaccctttcaac
aggcagccagttggcagtactcctggtagcgggttcgggaaccagacccagccggcaatc
aaccagccagcgaagagcaacactggagccatcaaaccaagtgatatttctaacatctgg
ccagagttgagtcaaacatttccgccagagattgatgaggaagccaacgggtacttccaa
cagatctacaaccagccgccgaaccccgtcatgtcggtggatgaggtccttcagatgctc
aaacaattcaaagactcgcaggtcaaaaaggaaagggaggtgtttatgtgtatgctgagg
aatctttttgaggagtacaagttcttccctcagtatccagagagggaacttctcatcaca
gcctgtctgtttggcggcatcatagagcaaggacttgtcacgtacatggcacttgggatc
gccctccgctacgttctggaggcgctgcggaagcctttcggcagtaagatgtactacttt
ggaatcgcagccttggataagttcaagacgcgtctgaaggactatccccagtactgccag
cacctgtcggccattcaacactttaacgagttcccacagcttctgacagagtatgtccag
tttggggtgatgtcaagggagccaccgcagcgtgtccctacaccatccagtactgtcatc
actgcagcttcgtcgacgacagcaacagaggtgactacacctgtgtccgctgtcaatgca
cccgctacgtcagccacgacaacgtccacagcgacgattactaaacccttaaccaagggt
ggtacacaagctccgtctattgcaaacacaactaacatcgacaccctgctggtggccaca
cccaaagatgaagtcatcaacgagccaccggaagcgattcaagacaaggtggcgttcatc
ttcaacaatctctcacagtccaatcagcctcagaagtgtgaggagctgagggaactgatg
tctgatgaatacctagactggctgtctcagtacatggtgatgaagagggccagcatcgag
atgaacttccatccgctctactccaactttgtggaccagatcaagaagggacaactgaac
gatctcctggtcaaggagacactgagaaatattgaggttttactgagctcggacaaaagt
gacgccaacttctcggatcggactcttctcaagaatctgggtcactggttgggaatgctg
acattggcaaagaacaaacctatcctacaaattgatctcgacatgaagtccctgatcctt
gaggcgtaccaccttggccagcaggagcttctctacgttgtccccttcgttgccaaggtg
atggaatcttgcagcaagagccgcgtcttcaagccacccaacccgtggacgatggccatc
atgggagtactggtcgagctccaccaggagcccaatctcaaactcaatctcaagtttgag
gtggaagtgctgtgcaagaacatggggctggaacccaaagatgtaaagacctacaactac
ctaacggattcctcacagctccgccatctccacgagaaacttaccggcgccaagaaggcc
ggcgaggagcagccgttaacccagccaccaatgcaacaacaacaacaacaacaacagcag
cccagtgtccagccgaacaccagcactccgatacccagcagtaccgcgggttctatggca
tctctggtgacggataccatgcccacgccgacgctgtctaccgtgacgacacctgcagtt
gctccgacggcaggtggcgccccggcggcgcagcagtccgctgcgcccataccgcagttc
agcttccatgatctgaacacgtcctcacttgctggtctggctcctcatattgccatcaat
gcacaaattccactattccagcagcatccacagcttcgtagctgtgtacgacccatgctg
gaaagagcagtgcaggaactagtccatcccgttgtggatagatcaatcaagattgctctg
actacgtgtgaacagatcgtcagaaaggattttgcgttggaccccgaggagaatcgcatg
cgcatcgctgcgcatcacatggtgcgtaacctgacagcgggtatggctatgatcacatgc
cgtgagcctctactaacaagcatcagcaatatgttcaagtcggcgtgcatcactgcactc
aagggaggcaccccacagactaaggagttgattgaccaagcagccaacgtggtagctaca
gagaatgtggagctcgcttgttgtttcatccagaaatgtgccgtggagaaagccatccca
gagatggacaggcgtcttgcaacggaaattgaactgcgcaagcacgctcgcaatgagaac
cgacgctattgtgacccggttgtcctgacataccaggcagagagaatgccggaacagatc
agactgaaggttggcggtgttccagctggccagatagctgtatatgaagagtttgcccgc
agtatccccggcttccagccgacactagaggctagccagcccccaggattcctggtcaaa
cccatgcagcaatcgtacgccacggacgaaatcacccagatttacgacaagtgtgtctct
gagatcgagcagcacctccacgctctgatccagtcctccgcccagaatcaacacatgcag
gtcttacacacactgctggaggcggtggtgctagccagaaactccagggagatagtcacg
gctctcgcactcctgcaaaaggccgttgagggcatccttgaaggctacacgccacagacc
atggatcctgagctggctctacgctacagagactgtcacatcttggttctgaaatcgcta
caagaccaacgggcttacggccctcagtggaccaacaaacaggttaccagagttgtttgc
gagacacgcggtgaccacaagtacaacttggacgctgtagagcagctgttcagggctcac
ctcattaatatgcagacatttgatatgcaacttgcacagtcgatggagaatgggctgaac
tacaccgcagtatcctttgccatgaacctcgtccgtcgctacctgatcgaggagaaacag
agtaacatcctgaacgaggcggacctctacaacacgctgcacatcctagcacgcatcgcc
agtcagacacccaacccaccagatggtctacaacacttgatcgaggtcgtccgtcagaac
catgaccccgccttcctggacaaggcccccggtggccccacctccatgatgcattcaggc
atctcacaggccagggagtttgacgacccaccaggcctgcgagagaagaccgagtacctg
ctgagggagtgggtcagcatgtatcactcacccgccagcggcaaggacagcaccaaggct
ttctctgcatttgtaaatcagatgcaccagcagggaatcctcaagacagatgacctcatc
acccgattcttccgcatctgcacggagctgtgcgtggacctctgctacagggctctctct
gagcaggcccacaccccgacgctgacaagggcaaagtgtttccacaccctggacgccttc
gtgcggctgatcgctctcctcgtcaaacactctggagacgctagtaatgcagtcaccaag
atcaatctgctgaacaaggtccttggcattgtagctggggtactccttcaggaccatgag
gtacgccatacagagttccagcagttgccgtaccatcgcatcttcaatatgctcctcctg
gagctcaacgccccggagcagatactggaagccatcaactaccagatcatgacggccttc
tgcaatgccttacatgtgttgaggccttccaaagccccagggttcgtatactcttggcta
gagcttatctctcatcggatctttatcgcaaggatgctggccatgttaccacaacagaag
caaggatggccaatgtatgcccagctcctgattgatctctttaagtttctggctcctttc
ctacgcaacgctgagctgccaaagtacacagcattgctgtacaaggggtgtttgcgtgtc
ctgctggtgctcctgcacgacttcccggagttcttgtgcgactaccactacggattctgc
gatgtcatcccgcccaactgcatccagatgcgcaatctgatcctgagcgccttcccgcgc
aacatgcgtctgccggacccgttcaccccgaacctgaaagtggacatgctgacggatatc
actcagccgccgcgcatcatgacgaacttctcggccatgattcaaccagcaaccttcaag
aaggatcttgactcgtacctgaagactcgtagtccggttacgttcctctcggagctacgc
agccacttacaggtctcccaagagcccggccagcgctacaacactgccctcatgaacgcg
ctggtgctgtacgtcggctctcaggccattgcgtacatccacagcaagggaagcacgccc
tccatgagcaccataacgcattcctcgcacatggacatcttccagaatctcgtggtggat
cttgatacggaaggtcggtatcttttcctgaatgcaattgctaaccagttacggtacccc
aacagtcacacacactacttcagctgcacgctactttatctcttcgctgaggcaaacaca
gaggcaatgcaggaacaaatcacaagggttctgctggagagattgatcgtcaacagaccg
cacccctggggccttctcatcaccttcattgacctcatcagaaatccaagcttcaagttt
tggaatcatgagtttgtccactgtgctccagagattgagaaattgtttgaatctgttgcc
agaagctgcatgcaacagaaggggcaagccccggcgatgaaccgcgaggccggggaggca
ctggactga
DBGET
integrated database retrieval system
