Luidia clathrata (European starfish): 117290822
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Entry
117290822 CDS
T10152
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
arun Luidia clathrata (European starfish)
Pathway
arun03040
Spliceosome
arun04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
arun00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117290822
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117290822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arun03041
]
117290822
04121 Ubiquitin system [BR:
arun04121
]
117290822
03400 DNA repair and recombination proteins [BR:
arun03400
]
117290822
Enzymes [BR:
arun01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117290822
Spliceosome [BR:
arun03041
]
Complex B
Other components
Prp19 complex
117290822
Complex C
Prp19-CDC5 complex
117290822
Ubiquitin system [BR:
arun04121
]
Ubiquitin ligases (E3)
U-box type E3
117290822
DNA repair and recombination proteins [BR:
arun03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
117290822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_TEP1_C
PEP5_VPS11_N
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
zf-Nse
U-box
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Tricorn_N
PAS_11
Beta-prop_VPS8
DUF7305
Pullul_strch_C
Motif
Other DBs
NCBI-GeneID:
117290822
NCBI-ProteinID:
XP_033628273
LinkDB
All DBs
Position
5:complement(20356025..20362633)
Genome browser
AA seq
510 aa
AA seq
DB search
MAFVCSICHEVPEHPVLSTVSNHVFEKRLIEKFIAENGVDPVSGESLSEDQLIDIKVSPV
VKPRPPTATSIPAILKLLQDEWDACMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAAPGIVPAQIAALPAGAAQGVAMHEPMEAAETGPAAMTEDIIQ
QLQEKANLLTAERKRRGKKVPDELMPPDDIRSFHTQSSHPGLHSASVPGILSMDLQASDT
SKVLTGGADKSVVVFNKDTEQVTAVMKGHTKKVTNVIYHPTEEIVFSSSPDTTIRIWFVG
NASCQQVIRAHNAPVTGLSLHATGDYLLSCSEDQYWAFSDIASGRVLTKVTDDSIGHALT
CAQFHPDGLIFGTGTGGSVIKIWDLKEGTNVANFPGHSGPITALSFSENGYYLATAADDA
VVKLWDLRKLKNFKNITLDDRYEVKSLCFDQSGTYLAVGGTDLRVYLCKQWQELKVFNDH
TDMTTGVRFGQHTTFMSSVSMDRSLKFYGL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgtttgttcaatctgccacgaggtaccagaacaccctgtgctgtcgaccgtg
tccaaccatgtatttgaaaaacgactcatcgagaagttcattgctgaaaatggtgtggat
ccagtctcaggggaaagtctttctgaagatcagctcattgacatcaaagtgagcccagtc
gtgaaaccaagacctccgacagcgaccagcatcccggccattctcaagcttctgcaggat
gagtgggatgcctgcatgctgcacagcttcaccttgcgccaacagctgcagacagccagg
caggaactgtctcacgccctgtaccagcatgatgcagcatgccgtgtcattgctcgacta
actaaggaggtaactgcagcacgtgaagctttggccactctcaagccccaagcagctccg
ggtattgtgccagcacagattgctgccctaccagccggtgctgcacagggagtagcaatg
catgaacccatggaggcagctgaaactggaccagctgctatgactgaggatatcatacag
caacttcaagagaaggccaatttgttgaccgcagagcgtaagcgacgagggaagaaggtt
cctgatgagctcatgcctcctgatgacatcagatcattccacacccagtcctctcatcct
ggtttacacagtgcaagtgtgcctggtattttatctatggatttacaagcctcagataca
tccaaggtgttgacaggcggtgctgacaagtcggtggtggttttcaacaaggatacagag
caggtcactgctgtcatgaaaggtcataccaaaaaggtcaccaatgtcatctatcatcca
acagaggaaattgtgttcagctcctcaccagacaccactattcgtatctggtttgtcggc
aacgcatcctgccaacaggttatccgtgcccataacgcaccggtcactgggctaagcctc
cacgcaacgggtgactacttactgagttgctcagaagaccagtactgggccttctcggat
attgccagtggacgtgttttgaccaaggttactgatgactccattggacatgctttgaca
tgtgcccagttccaccccgatggtctgatcttcggtacgggaactggtggcagcgtcatc
aaaatctgggacttgaaggagggaaccaacgtggccaacttccccggccactcgggacca
attacagccctctctttctctgagaatggttactatctcgctacagctgccgacgatgct
gtggtcaagctgtgggatttacgaaagctgaagaatttcaagaatattactttggatgac
agatatgaggtgaagtcactgtgctttgatcagagcggtacttatttagctgtgggcgga
actgacttgagagtctacttgtgcaaacagtggcaggaactcaaagtcttcaatgatcac
actgatatgacgaccggtgttcgttttggccagcataccaccttcatgtcgtcagtcagt
atggatcgtagtctcaaattctacgggctctga
DBGET
integrated database retrieval system
