Acipenser ruthenus (sterlet): 117424087
Help
Entry
117424087 CDS
T07327
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117424087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117424087
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117424087
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117424087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117424087
NCBI-ProteinID:
XP_033896033
LinkDB
All DBs
Position
17:3561473..3594233
Genome browser
AA seq
2440 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVVFGLALLNSSSSDLKGFAAQFVKQKLPDLLRSYVDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLKTLCRDFPQERCPVVLAPLLYPEKRDFLMDRIL
PDSGGLAKTMMESSLADFMQEVGYGFCASLEECRNIIMQYGVREITASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKTDGSQAHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHHGFIIRDSKALQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFVQHSLMNPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQASVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACMQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSVSPLQI
DPLSGMASLNISGSAASHAQSMQGFPTNLSSAFSNPQSPAKAFPALTNPSQTTPFSGIGG
LSSQLPGSLGSSSLTSMGSGLGIPTVNSDPFGQRKMSTSGLNPPTFQQSKIMPSDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASITHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQAQVPPKAPLPGQVSTIVTTSTTTTVAKTTTITRPTGVSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNQDFIKMVLSETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGIITLSKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFIAKVLESSVRSM
IFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLK
ALDEQLSAPKKEAKPPEEMLPIVPPGEFLPFAAAPSTPATTTTCTATGPPTPQFSYHDIN
VYALAGLAPHINFNQNIPLFQAHLQLKQYVRQAIERAVQELVHPVVDRSIKIAMTTCEQI
VRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAPTQQ
QREMMEQAAAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDP
VVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQA
WATDDVAQIYDKCIADLEQHLHAVPPALAMNPQTQALRSLLEAVVVARNSRETIAALGLL
QKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSQWCNKQITRCLIECRDEYK
YNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEA
DLFHTIETLMRTSAHSRANAPEGLDDGYSVLAETPSNSKLASVAEDHRLPQLMEVVRSNY
EAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFS
AFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLD
AFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIML
LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQ
QKGWPMYAQLLIDLFKYLGPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGF
CDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFK
KDLDSYLKTRSPVTFLSELRSNLQVGGAILGPWKHLQHSDTSLDQVSNEAGNRYNIQLIN
ALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRY
PNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFK
FWNHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7323 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggccttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgacacggc
cccgaggcagacaggcatttattacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagcggcaaagattttcatcagacacagtttttgatccaggagtgtgtgtcg
cttataaccaagccaaattttatctcaacgctgtcctacgctattgacaatccattacac
tatcagaagagtttaaaaccttcaccccatttgtttactcagctgagtaaagttctcaag
ttaagcaaggttcaagaggttgtttttggccttgccttgttgaattcttccagctcagat
ctgaaagggtttgctgcccagtttgtgaaacagaagctccccgatcttctgcgttcttac
gtagacgcagacgttgggggtaaccaagaaggtggcttccaggatattgcaatagaggtc
ctgcacctgctcctctcccatctcctctttgggcagaaaggagcctctggggtcggacag
gaacagatagaagctttcctcaagactctgtgcagagattttccgcaggagcgctgtcct
gtggtgcttgcaccactgctttaccctgaaaaacgggactttctgatggacaggatcctg
ccagactctggagggttagctaagaccatgatggagagttctctcgcagactttatgcaa
gaagttggctacggcttttgtgcaagtcttgaagaatgccgcaatataatcatgcagtat
ggagttcgggagatcaccgcatcccaggtggccagggtcctgggcatgatggcccgcact
cactccggattgtctgatggcattccccttcagtccatctctgctcctggcagtggtatc
tggagcgatgggaaggataagactgatggatctcaggctcacacctggaatgtggaagtt
ttaattgatgttgttaaagaactgaatcccaatttgaacttcaaggaagtgacttacgaa
cttgatcatcatgggttcatcattagggacagcaaggcactgcagattgtggtgtatggt
atccaaaggggactgggaatggaagtgttccctgtggatctcatttacaggccttggaaa
catgcagagggccagctgtcttttgttcaacattccctgatgaacccagatatcttctgt
tttgcggattacccctgtcacactgttgctactgatattttaaaagcaccaccggaggat
gataaccgggaaatagcaacgtggaagagtctggacctaattgaaagtctattacgtctg
tcagaggtggggcagtacgagcaggtgaaacagctcttcaacttccccatcaagcactgt
cctgacatgttagttctggccttactacagatcagtacctcctggcacactctgcgccat
gaacttatctctaccctcatgccaatcttcttgggaaaccatcccaactctgccattatt
ttgcactacgcttggcacggacagggtcagtctccctctatccgtcagctgatcatgcac
tctatggcagagtggtatatgaggggagaacagtacgatcaggcaaagctctcacgcatt
ctggatgtggctcaggacctgaagtctctgtccatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgacaaatgg
ctgacagataaaatacgggagcatggggaacccttcatccaggccagtgtgacattctta
aagcgacggtgcccttccatcatgggaggcctggccccagaaaaggaacagcccaaaagt
gcacagctccctcctgaaacactggctaccatgctggcatgtatgcagtcctgtgcaggg
agtgtttcccaggaactgtcagaaacaattctgaccatggtagcgaactgtagcaatgtc
atgaacaaagccagacaaccacccccaggagtcatgccaaagggacgtgctcctagcacc
agcagcttagatgccatctcccctgtacaggtatcggtctccgtctcccctcttcagatt
gaccccttgtctgggatggcgtctctgaatataagtggctctgctgcgtcccacgcacag
agcatgcagggatttcccacaaacctgagttctgcattcagcaacccccagtcaccagcc
aaggccttccctgctctcaccaatcccagccagacaacaccattcagtggcattggaggc
ctctcatctcaacttccaggttctttaggatcgagtagcttgacaagcatgggaagtgga
cttgggataccaacagtgaacagtgatcctttcggacagaggaagatgagcacatctgga
ttgaacccacccaccttccagcagagtaagataatgccttctgacctctctcaggtgtgg
cctgaggcaaaccagcactttagcaaagagattgatgatgaagccaacagctactttcag
cgcatttacaaccatccacctcaccccaccatgtcagtggatgaggttctggagatgctg
cagaggttcaaggactccaacattaagcgggagcgtgaagtgtttaattgcatgctgagg
aacctgtttgaggagtatcgtttcttccctcagtatcctgacaaggaactgcacatcact
gcctgcctctttggtggaatcattgagaaggggctggtcacctacatggcgctggggttg
gccctgcgctatgtccttgaagccttaaggaaaccatttggatccaaaatgtattacttt
ggtatcgctgccctagatagatttaaaaatagattgaaggattatccccagtattgtcag
cacttggcgtctattactcactttctacagttccctcatcatttacaggagtgtgtgcag
tatatcgagtatgggcaacagtcccgagaccctccagtgaagatgcagggctcgatcact
acgcctggcagtcttgctcttgctcaggctcaggctcaggcgcaagtgccccccaaggct
cctctccctggccaggttagcaccatagtaacaacatctaccacaaccactgttgctaaa
accactaccatcacccgccccactggagtcagcttcaagaaggatgtgcctccttccata
aacacaaccaacattgacacactgcttgtggccacagaccaaacggagagaatagtggag
ccacctgaaaatgttcaagagaagattgccttcatctttaacaatctttctcagtccaac
atgacacaaaaggttgaagagctgaaggagactgtgaaagaggagtttatgccttgggtt
tcacaatatcttgtgatgaagagagtcagcattgaacccaactttcacagcctttactct
aacttcctggatacactaaaaaaccaagattttatcaagatggttctaagtgaaacctac
agaaatataaaggtcctactgacttccgataaggctgcagctaacttctctgatagatcc
ctcctgaagaacctgggccactggctgggcatcatcacattgtcgaaaaacaaacccatc
ttgtatacagatttggaaataaagtctttgctgctggaagcttacgtaaagggacagcaa
gagcttctctatgtggtgccatttattgccaaagtgttggaatccagcgtgaggagtatg
attttcaggcctcagaacccatggacaatggcaatcatgaatgtactggcagaacttcac
caggagcatgacttgaagctgaacctgaagtttgagattgaagtactgtgcaagaatctg
tccctggatatcaatgaccttaagcctggaaacctgctgaaagacaaagacaagttgaag
gccctagatgagcagctatctgcaccaaagaaggaagctaaaccacctgaggaaatgcta
cccattgtcccacctggagaatttctcccctttgcagctgctccgtctacacctgccaca
actactacatgcacagctaccggtccaccaactcctcagtttagttatcatgatattaat
gtctatgctctggcagggcttgctcctcacataaatttcaaccaaaatatacccttgttc
caggcccacctgcaactgaagcagtatgtgcgtcaagctatagagagggcagtccaggag
cttgttcaccctgttgtggatcgttccatcaaaattgccatgaccacctgtgagcagatt
gtcaggaaggactttgctctggactctgaggagtcacgcatgcgtgttgctgcacatcat
atgatgcgtaacctgacagcagggatggctatgatcacctgtagggaacctctgcttatg
agcattgctaccaatctgaagaacagctttgccacagccctcagggctccgacccaacag
cagagagaaatgatggaacaggcagctgcacagatagcccaagacaactgtgagcttgct
tgctgctttattcagaaaacagcagtggaaaaagctggcccagaaatggataagaggctg
gcaactgaatttgagctgcggaaacatgccagacaagagggccgtcgatactgcgatcct
gtggtactgacctatcaagcagagcgcatgccagaacaaattagacttaaggtcggtggt
gtggaccctaagcagctggctgtttatgaggagtttgcacgcaatgttcctggtttcctt
cccagcaatgatctctcacagcccacaggtttcctggctcaacccatgaagcaacaggcc
tgggcaacagatgatgtggcacagatctatgacaagtgcatcgctgatctggaacagcac
ttgcacgcagtccctcctgcgttggctatgaacccccagacacaggccctgcgtagtctg
ctagaagctgtggtggtggcaaggaattcacgcgaaaccattgcagcattgggcttgcta
cagaaggctgtggaaggattactcgatgccacaagtggtgctgatgcagacctcctgctc
agataccgcgagtgtcacctgttggttctaaaggccctgcaggatggccgtgcctatggc
tctcagtggtgcaacaagcagatcaccaggtgcttgattgaatgtcgtgacgagtacaaa
tacaatgttgaagctgtggagctgcttatcagaaaccatctggttaatatgcagcagtac
gacctacacctagcccagtcaatggaaaatggcctgcattacatggctgtggcattcgct
atgcagttagtgaagttacttctggtggacgagaggagtgtgagccacatcactgaagct
gacttgttccacaccatcgaaacactcatgagaaccagcgcccactccagagcaaacgct
cctgagggcttggatgatggttactccgttctagctgagaccccctcaaatagtaaactt
gcatctgttgcagaagatcacaggctgccccaactaatggaagtggtccggtcaaactat
gaagcaatgattgaccgtgcccatggagggcccaatttcatgatgcactctgggatctcg
caggcatcagaatatgatgaccctcctggcctgagggagaaggcagagtacttactgaga
gagtgggtgaacctctaccactctgcagctgccggtcgagacagcaccaaggccttctct
gcctttgtgggacagatgcaccagcagggaatcctgaagactgacgatctgataacccgt
ttcttccgactgtgtacggagatgtgtgtggagatcagttaccgcgcccaggcagaacag
cagcacaaccctgctgccagtgccgccatcatccgtgccaagtgctatcataacctggat
gcctttgttagactcatcgcacttctagtcaaacactctggagaggcgactaacacagtg
acgaagatcaacctactcaacaaggttctgggtattgtggtcggagtccttattcaggac
catgatgtccggcagactgagtttcaacaattgccctatcacagaatttttatcatgctg
ctgttggagttgaatgcaccagagcatgtgctggaaaccatcaacttccagacattgact
gctttctgcaatactttccatatcctgcggcccaccaaagctcctgggtttgtgtacgcc
tggctggaactgatatctcatcgcatatttattgctaggatgctggcacatacaccccaa
cagaagggctggcccatgtatgctcaactgctgattgacctgttcaaatacctgggtccc
ttcttaaggaatgttgagctcaacaaacctatgcaaattctctacaagggcactctgcgt
gttttgctggtcctcctccatgacttcccagagttcctgtgtgattaccattatggcttc
tgtgacgttatcccacccaactgtatccaactgcggaacctgattctcagtgccttccca
cgcaacatgaggcttccggatccatttactcctaacctgaaggtggacatgttgagtgaa
atcaatattgctcctcgtattctcactaatttcactggagtgatgccacctcagtttaag
aaagatttggactcctacctgaagactcgttctcctgttactttcttgtccgagctccgc
agcaacctgcaggtagggggcgccattttgggtccctggaaacatttgcagcacagcgac
acatcattagaccaggtttctaatgaggcagggaatcgttacaacattcagcttatcaat
gcactggtgctctatgttggaacccaagcgattgctcacatccacaacaagggtagtaca
ccatccatgagcaccatcacacattctgctcatatggacatcttccagaacctggctgtg
gacctcgatactgagggccggtacctgtttctgaatgcaattgccaatcagctgcgttac
ccaaacagccacactcactacttcagttgcacaatgctctatctgtttgctgaggccaac
actgaggctatacaggagcagataaccagggttctacttgagaggttgattgtgaacagg
cctcacccatggggtttacttatcactttcatcgagttgattaaaaacccagccttcaag
ttctggaaccatgactttgtccactgtgcaccagagattgaaaagttgttccagtcggtg
gcccagtgctgcatgggacagaagcaggcacagcaagtgatggaaggcactagtgctagt
tag
DBGET
integrated database retrieval system
