KEGG   Acipenser ruthenus (sterlet): 117429559
Entry
117429559         CDS       T07327                                 
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117429559
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arut03019]
    117429559
Messenger RNA biogenesis [BR:arut03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     117429559
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 CSTF1_dimer Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Aladin NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_VPS8 Ge1_WD40 Beta-prop_NWD2_C Beta-prop_SPT8 Frtz DUF7099
Other DBs
NCBI-GeneID: 117429559
NCBI-ProteinID: XP_033905089
LinkDB
Position
28:2758911..2763334
AA seq 431 aa
MYRPKATLRDRQHLYRLIISQLLYDGYTNIANCLIGEVKPPTVVSPSEQLLQLAKLGMEN
DDTAVQYAIGRSDTVAPGTGIDLEYDADMQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYVQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDVNTFQCYVSCNPRDQHTDTISGVSYNPSANSYVSCSKDGSIKLWDGVSNRCVVTF
DKAHDGAEVCSAVFSKNSKYILSSGKDSVAKLWEISTGRPLVKYTGAGLSGRQMHRTQAV
FNHTEDYVLLPDERTISLCCWESRSAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtaccgcccgaaggccacgctcagagaccggcaacatctctacagactcataatcagc
cagctgctctacgatggctacaccaacattgccaactgcctcatcggagaggtgaagccc
ccgactgtggtctcgccatctgagcagctgctgcagctcgccaaactggggatggagaac
gacgacaccgcggtgcagtatgcaatcgggcgctcggacacagtggctccaggcactggg
attgacctggagtatgacgctgacatgcagactatgtcccctgaagcctcagagtatgag
acctgttacgtcacctcccacaaggggccctgccgcgtggcgacctacagccgagacggg
cagctcattgccaccggctcagcagacgcctccatcaaaatcctggacacggaacgcatg
ctggccaagagtgccatgcccattgaggtgatgatgaatgagactgcacagcagaacatg
gagaaccaccctgtcatccgcacgctgtacgatcatgtagacgaggtcacctgcctggct
ttccaccccactgagcagatcctggcatcggggtcccgcgactacacgctcaaactcttc
gactactccaagccctccgccaagagagcctttaaatacgtacaggaagcagaaatgctg
cgttccatctcgttccacccctcgggggacttcttgctggtgggcacgcagcatccgacc
cttcgcctgtacgacgtcaacaccttccagtgctacgtgtcctgcaaccctcgcgaccag
cacaccgacaccatctcgggcgtcagctacaaccccagcgccaacagctacgtcagctgc
agcaaggacggcagcatcaagctgtgggatggcgtgtcgaaccgctgcgtggtcaccttc
gacaaggcgcacgacggtgcagaggtctgctccgccgtcttctccaagaactccaagtac
atcctgtccagcggcaaggactccgtggccaagctgtgggagatctccacgggccgccct
ctcgtcaagtacactggcgctggtttgagcggtcggcagatgcaccgcacccaggcggtg
tttaaccacactgaggattacgtgctgctgccagacgagaggaccatcagtctttgctgc
tgggagtctcgctcggccgagaggaagaacctgctctccctgggacacaacaacatcgtg
cgctgcatcgtccactcgcccaccaaccccggcttcatgacctgcagcgacgacttccgc
gcacgcttctggtaccgcaggaccaccacggactga

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