Alosa sapidissima (American shad): 121684360
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Entry
121684360 CDS
T11137
Name
(RefSeq) short transient receptor potential channel 4-like isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121684360
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121684360
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
Ank
Ank_3
Ank_5
PKD_channel
Egg_lysin
Motif
Other DBs
NCBI-GeneID:
121684360
NCBI-ProteinID:
XP_041920288
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Position
15:complement(17158501..17184027)
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AA seq
1008 aa
AA seq
DB search
MSQLYYRRTDNSSYRDRIPLRIVRAESELSTQEKAYLSAVEKGDYASVKLALEEAEIYFK
ININCIDPLGRTALLIAIENENLEIIELLLSYNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPVLLDKQFSDFTPDITPIILAAHTNNYEIIKMIVQKGVSVPQPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLVALSSEDPFLTAFQLSWELQELSKVENEFKAE
YEELSRQCKKFAKDLLDQTRSSRELELILNFRDDINMLQDDNHNELARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAGKFLTSIFIGLLFPLFSICYLVAPKSRYGLFIR
KPFIKFICHTASYLTFLFLLLLASQRIVSYTDPNRQGPVPTTVEWMILPWVVGFIWTEIK
QMWDGGFHDYIHDWWNLMDFVMNSLYLATISLKIVAYVRWPMDANCVQIHTPPSLLNCSR
SNGHKDSTHISCYSGIKERGKWEMWHPTLVAEALFAIANIFSSLRLISLFTANSHLGPLQ
ISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYEFKDGYEGCKGIRCERQNNAFSTLF
ETLQSLFWSIFGLISLYVTNVQPDHVFTEFVGATMFGTYNIISLVVLLNMLIAMMNNSYQ
HIADHADIEWKFARTKLWMSYFEEGGTLPPPFNIIPSPKSGWYFIQWIRRNIFKKRDKLT
ETFGSLGRKAAENVRIKHQYQEVLRSLVKRYVAAMIRDAKTEEGLTEENFKELKQDISSF
RYEVLGMMKGNRSCVPALSPREAACSYSHPDHLLPYALPPATLGPSSPTAKLNLYEVTTI
LQHHHHHGMDAGEPISNLANGTANPLRNEACSSSEALCSAACGPTSSSSSRERTSRKDFP
KDISNFGLFQKSQSKKRTQCPSQSSIYSLSEEADELDREKTDEKCGEEQKEVEEEEEDDA
EGEEERQPSQEEREKNKRMSREEEAQEAEEDDDGMKGAMMEKEKLTRS
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagctctactaccgtcgcacggacaactcttcataccgggaccgcatcccactg
aggatagtccgggctgagtcagagctttcgacccaggagaaggcgtacctgagcgcggtg
gagaagggcgactatgccagcgtcaagctagcacttgaggaggctgagatctacttcaag
atcaacatcaactgcatcgatccactgggacgcaccgctctcctcatagccattgagaat
gagaacctcgagatcatcgagctcctgctcagctacaacgtctacgttggtgatgccctg
cttcacgccatacgcaaggaggtggtgggggctgtggagctgctgcttaaccacaagaag
cccagcggagagaaacaggtccctccggtgctgctggacaagcagttctccgacttcacc
ccggacataacccccatcatcctggcggcgcacaccaacaactacgagatcatcaagatg
atcgtccagaagggtgtctctgtgccgcagccacacgaggtgcgctgcaactgcgtggag
tgtgtgtccagttcagacgtggacagcctgcggcactcgcgctcgcgcctcaacatctac
aaggccctggcgtcgccctcccttgtcgctctgtccagcgaggaccctttcctcaccgcc
ttccagctcagctgggagctgcaggagctcagcaaggtggagaatgagttcaaggcagag
tatgaggagctgtcgcgccagtgcaagaagttcgccaaggacctgctggaccagacacgt
agctcccgtgagttggagctcatcctcaacttccgcgatgacatcaacatgctacaggat
gacaaccacaatgaactggcgcgtctcaagctggccatcaagtaccgtcagaaagagttt
gtggcccagcctaactgccagcagctgttggcctcgcgctggtacgacgagttccccggc
tggcggcggcgccactgggcgggcaagttcctgaccagcatattcatcggcctgctcttc
ccgctcttctccatctgctacctggtggcgcccaagagccgctacggcctcttcatccgc
aagcccttcatcaagttcatttgccacacggcatcctacctcaccttcctcttcctcctg
ctccttgcctcccagcgtatcgtctcctacactgaccccaaccgacagggcccggtgccc
acgacggtggagtggatgatcctgccgtgggttgtgggtttcatatggacagagataaag
cagatgtgggatgggggctttcatgactacattcacgactggtggaacctcatggacttt
gttatgaactccctctacttggcaaccatatctctgaagattgtggcctatgtgaggtgg
ccgatggatgccaattgcgtccaaattcacacccctccttctctgttgaattgctcgcgg
agtaatggtcataaagatagcacacacatatcatgttacagtggcattaaggagcgaggc
aaatgggagatgtggcaccccaccctggtggccgaggccctgttcgccatcgccaacatc
ttcagctcgctgcgtctcatctcgctcttcacggccaactcgcacctaggcccgctgcag
atctcgctcggccgcatgctgctggacatcctcaagttcctcttcatctactgcctcgtc
ctgctggccttcgccaatggcctcaatcagctctacttctactacgagttcaaggacgga
tacgagggctgcaagggcatccgctgcgagcggcaaaacaacgccttctccacgctcttc
gagactctccagtctctgttctggtccatatttggtttgatcagcttgtatgtcaccaac
gtccaaccagaccatgtgttcacggagttcgtgggggccaccatgtttggcacatacaat
atcatctcgttggtggtgttactcaacatgctcattgcgatgatgaacaactcctaccag
cacattgccgatcatgccgacattgagtggaaatttgctcgaaccaagctgtggatgagc
tattttgaagaggggggcacgttgcctcccccctttaacatcatccccagccccaaatct
ggctggtacttcatccagtggatcaggcggaacatcttcaagaagagggataaactgaca
gagacatttggatccttggggcggaaagctgcagaaaatgttcgaataaagcaccagtat
caggaagtcttaagaagcttggtgaagcggtatgtggcagccatgatcagagacgcaaag
acagaagaaggcctcacggaggaaaactttaaggagctgaagcaggacatctctagcttt
cgctatgaggtgctgggcatgatgaagggcaatcggagctgcgtgccagccctgagcccc
cgagaggccgcctgcagctacagccatcctgaccacctgcttccctacgccttgccccct
gccacgctgggtcccagttccccgacagccaagctcaacctgtacgaagtcaccactatt
ctgcagcaccaccaccaccatggcatggatgcaggagaacccattagcaacctggctaac
ggcacggctaatcccctgcggaacgaggcgtgctcgtcttccgaggccctgtgctcggca
gcctgtgggccaacttcctcgtcttcctcccgagagcgcacgtccagaaaagacttcccc
aaggacatctccaactttggactgttccagaagagtcaaagcaagaagcgtacccagtgc
cctagccaaagtagcatttactcgctgtctgaagaggcagacgagttggacagggagaag
acagatgaaaaatgtggggaagaacagaaggaggtggaggaggaagaggaggacgacgca
gagggagaagaagagagacagcctagccaggaggagagagagaagaacaaacggatgagc
agagaggaggaggcacaggaagcagaggaggatgatgatgggatgaaaggagctatgatg
gagaaagagaaactgacccgctcttga
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