Alosa sapidissima (American shad): 121698494
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Entry
121698494 CDS
T11137
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
asad04040
]
121698494 (scn1lab)
Ion channels [BR:
asad04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121698494 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Motif
Other DBs
NCBI-GeneID:
121698494
NCBI-ProteinID:
XP_041936585
LinkDB
All DBs
Position
23:complement(15255760..15299008)
Genome browser
AA seq
2055 aa
AA seq
DB search
MAAQLLVPPGPESFRRFCPESLAAIERRIAEEIARKPKDARRCDPDDENGPKPNSDLEAG
KSLPFIYGDIPSGLVSVPLEDLDTYYHNQTTFIVLNRGKAIFRFNATPALYILSPFNLMR
RIAIKVLVHSMFSFFIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVISMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRIPTNDTTPIPTGLPPNHTA
LGSAEDQELLASMSLMTFNNTFNWTEYLNNETNYYYLPGRRDALLCGNGSDAGQCPEGFS
CIKAGRNPDYGYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLG
SFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAATTGESG
DYSASCGCRRAPSEESSSGGGSRLSSKSAKERRNRRKKRRQREEQEEEEEEEVAEKRDAE
KFHKSASEDSIKRSFRFSIDANRLSYDKKCSTPNQSLLSISRASLFSPRRTSRASLFSFR
DRARDFGSENDFADDEHSTFEDSESRRGSLFVPRRTDRRGSNVSQRSLGAPRIILPANGK
MHCTVDCNGVVSLVGGTSVPTSPVGRLLPEGTTTESDVKKKRSGSHRTSMDYLDDTVARQ
RALSVASILTNTMEELEESRQKCPPCWYKFANTFLIWDCCQGWLKIKEVVNMVVMDPFVD
LAITICIVLNTLFMAMEHYPMTKEFNDVLSVGNLVFTGIFTAEMCFKVIALDPYYYFQEG
WNIFDGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKSYRDCVCKISSDCELPRWHMNDFFHSFLIVFRVLCGE
WIETMWDCMEVAGQTMCIIVFMLVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNN
LQIAMGRIHNGIAFIKAAMRQFLQSLCLGAGGKPGALDEEKPLDDLHSDVAKENCLTNHT
SLVVSVGVGVGAGGEITKDFLKTESGGGGGGHVTTGNGVDGRGGYGMEEGDYTSFIHNPS
LTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLPVDRQLSSSEGSTVDIRPPGEGPE
GSIELETEESLDPEACFTEDCVRRFQCCQVNVEVGRWKSWWTLRKTCFRIVEHNWFETFI
IFMILLSSGALAFEDIYIEQRKTVKTMLEYADKVFTYVFILEMLLKWVAYGFVKYFTNAW
CWLDFLIVDVSVVSLLANALGYSELSAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAI
PSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNSTTDELLSVSLVNNKTECLALVNDSA
RWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEEQPMYEVNLYMYLYFVIF
IIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP
MNKFQGCVFDFVTKQAFDIVIMILICLNMVTMMVETDDQTTDMDTCLYWINLVFIVLFTG
ECSLKMISLRHYYFSLGWNIFDFVVVILSIVGMFLSDVIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKHEAGIDDMFN
FETFGNSMLCLFQITTSGGWDGLLAPILNNKEPDCSYRMEHPGSSVRGNCGNPSVGIFFF
VSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPDATQFVEYD
KLPEFADALDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDILFAFTLRVLGEEGEMDALR
GQMEERFMASNPSKVSYEPITTTLRRKQEEMSATIIQRAFRRYHLRRTVKRASNMYRQLQ
DGGAVIGRGGEKVPDKEVLVIVKFNENSASDKTDMTPSSASPPSYNSVAKSDKDKYEKDR
REKEDKAKDTRDRKK
NT seq
6168 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccagcttcttgttcctcccggacctgaaagcttccggcggttctgcccggag
tccctggccgccatcgagaggcgcatcgctgaggagatcgcacggaagcccaaggacgca
aggcggtgcgacccagatgacgagaatggacccaagcccaacagtgacctggaggcaggg
aagtccctgcccttcatctacggagacatcccatctggcctggtgtccgtaccactggag
gacctggacacctactatcataaccagacaacgtttatagtgttaaaccgtgggaaggcc
atcttccgcttcaatgccacccctgccctctacatccttagccccttcaacctgatgcga
agaatcgccatcaaagtgcttgtgcattcgatgttcagttttttcatcatgtgcactatt
ctgaccaactgcgccttcatgacgctgagcaatccaccagactgggccaaaaatgttgag
tacacgttcacagggatctacacgtttgagtcccttatcaagatcctggcgcggggattc
tgtgtggggaagttcaccttccttagggatccttggaactggctcgacttcagtgttatc
tccatggcatatgtgacagaatttgtggacctcggcaatgtctctgcactccgaaccttc
agggttctccgggctctcaaaactatatcagtcatcccaggcctgaagaccattgtgggc
gctctgatccagtcggtgaagaagctgtcggacgtgatgatcctgacggtgttctgcctg
agcgtgttcgctctcattggcctgcagctcttcatgggcaacctacggcagaaatgcgtg
cggatccccacgaacgataccacgcccatacccactggcctgccgcccaaccacactgca
ctgggcagtgccgaagaccaggaactgctggccagcatgagcctgatgacgttcaacaac
acctttaactggactgagtacctcaacaatgaaaccaactattactatctaccaggccgg
cgtgatgctctactctgtggaaatggcagtgatgcagggcaatgcccagagggcttttcg
tgcatcaaggcgggtcggaacccggactacggctacaccagcttcgacacttttagctgg
gccttcctctcgctcttccgcctcatgacgcaggactactgggagaacctctatcagcag
accctccgtgcggctgggaagccctacatgattttctttgtgctggtgatctttctgggc
tcgttctacctggtcaacctgatcctggccgtggtggccatggcctacgacgagcagaac
caagccaccatcgaggaggcgcagcagaaggaggaggagttccaggccatgctggagcag
ctcaagagacagcaggaggaggcgcaggttgccgcggcggcgaccacgggcgagagtggc
gactacagcgccagctgcggctgtcggagggccccgtcggaggagagctcgtcgggtggc
ggctcacgcctcagctccaagagcgccaaggagcgccgcaaccgccgcaagaagcgaagg
caacgcgaggagcaggaggaggaagaggaggaggaagtggccgagaagagggacgcagag
aagttccacaagtcggcgtcagaggacagcatcaagcgctccttccgcttctccattgac
gccaaccgcctgtcctacgataagaagtgctcgacgcccaatcagtctctcctgagcatc
tcgcgtgcctccctcttttccccgcgccggacaagccgagcgagcctcttcagcttccgg
gaccgggcacgcgactttggctcggagaatgacttcgccgacgacgagcacagcacgttt
gaggacagcgagagccggcgcgggtcgctcttcgtcccgcggcgcaccgaccggcgaggc
tccaacgtcagccaacgcagcctgggggcgccgcgcattattctgcccgccaatgggaag
atgcactgcactgtcgactgcaatggtgtggtgtcgctggtcgggggcacgtctgtgccc
acctcgcctgttggcaggttgcttccagagggcaccaccactgagtctgatgtgaagaag
aagcggtcaggatctcaccgaacctctatggactatctggacgacactgtggccaggcag
agggctctgagcgtggccagcattctcaccaacacaatggaggaactggaggagtctcgt
cagaagtgccccccctgctggtacaagtttgccaataccttcttgatctgggactgctgc
caggggtggctgaagatcaaggaggtggtcaacatggtggtgatggacccgtttgtggac
ctggctatcaccatctgcatcgtgctcaacacactcttcatggccatggagcactacccc
atgaccaaggagttcaacgatgtcctctctgtgggaaacctggtgttcactggcatcttc
acagctgagatgtgcttcaaggtcatcgccctcgacccttactactatttccaggaaggc
tggaacatctttgacggtatcattgtcagcctgagcttgatggagttgggtctagctaat
gtggagggtctttctgttctacggtcattcagattgttaagggtatttaagctggccaag
tcctggcccacactcaacatgctcatcaagatcatcggcaactctgtgggcgccctggga
aatttgacccttgtgctggccatcatcgttttcatcttcgctgtggtgggcatgcagctg
tttggcaagagctaccgcgactgtgtgtgcaagatctcgtccgactgcgagctgccccgc
tggcatatgaacgacttcttccactccttcctcatcgtgttccgcgtactgtgtggcgag
tggatcgagaccatgtgggactgtatggaggtggccggccagaccatgtgcatcattgtc
ttcatgctggtcatggtcatcgggaacctggtggttctaaacctctttctggccttgctg
ctgagctcgttcagtgcggacaacctggcggcgacggatgacgacagcgagatgaacaac
ctgcagatcgccatgggccgcatccacaacggcattgcattcatcaaggcagctatgcgg
cagttcctgcagagcctgtgcttgggcgcggggggcaagccaggggcgctggacgaagag
aagcccctggacgacctccacagtgatgtggccaaggagaactgcctgaccaatcacaca
agcctggtggtcagtgttggtgttggtgtcggtgcgggcggggagatcaccaaggacttc
ctaaagacagagagtggaggtggcggtggtggccatgtcaccacgggcaacggggtggac
gggcggggtggttatgggatggaggagggcgactacacgtcgttcatccacaacccgagc
ctgaccgtcactgtgcccatcgcggtcggcgagtctgacttcgagaacctgaacacggag
gacttcagcagcgactcctcagatgtggagggaagtaaagagaagcttccggtagacagg
cagctcagttcgtcagaggggagcacggtggacatccgacccccaggggaggggcctgag
ggctccatagaactggagacagaggagtccttggatccggaggcctgcttcactgaagac
tgtgtgaggcgtttccagtgctgccaggtaaatgtggaggtgggtcgctggaagagctgg
tggacgctaaggaagacctgcttcaggatcgtggagcacaactggttcgagaccttcatc
atcttcatgatccttcttagcagtggtgctctggcctttgaagacatttacattgagcag
aggaagacagtgaagaccatgctggagtatgctgataaagtcttcacctacgtgttcatc
ctggagatgttgctgaaatgggtggcctacggcttcgtcaagtactttaccaacgcctgg
tgctggctggacttcctcattgtcgacgtgtcagtggtgagcctgttagcaaacgctctt
ggttattcggaactgagcgccatcaagtccctgaggactctacgagcactgagacccctg
agagccctgtcacgctttgagggcatgagggtggtggtgaacgctctgctgggcgccatc
ccctccatcatgaacgtgctgctggtgtgccttatcttctggctcatcttcagcatcatg
ggcgtcaacctgttcgccggcaagtactaccactgtgtcaacagcaccacggatgagctg
ctgtctgtttcactggtcaacaacaagacagagtgcctggcactggtcaacgacagcgcc
cgctggaagaacgtcaagatcaacttcgacaacgtgggcgcgggctacctggcactgctg
caagtggctacatttaaaggatggatggatatcatgtatgcggctgtggactcacgcaat
ctggaggagcaacccatgtacgaggtgaacctgtacatgtatctctacttcgtcatcttc
atcatcttcggctccttcttcaccctcaacctcttcattggtgtcatcatcgacaacttc
aaccagcagaagaaaaagtttggaggtcaggacatcttcatgacagaggaacagaagaag
tattacaatgccatgaaaaagcttggatccaagaaaccacagaaaccaattccaaggcca
atgaacaagttccagggctgcgtgtttgactttgtcaccaagcaagccttcgacattgtt
attatgatcctgatctgcctgaacatggtgactatgatggtggagacggacgaccagacc
acggacatggacacttgcctctactggatcaacctggtctttattgttctcttcactggc
gagtgtagcctcaagatgatctcgctgcgacattattacttctctctgggatggaacatt
ttcgactttgtggtggtcatcttgtccattgttggtatgttcctctcggacgtcatcgag
aagtactttgtgtcgccaacgctgttccgagtcatccgtcttgctcggattggccgcatc
ctgcgtctcatcaaaggcgccaagggcatccgcacgcttctcttcgccctcatgatgtca
cttcctgctctcttcaacatcggcctcctcctcttccttgtcatgttcatctacgccatc
tttggcatgtccaacttcgcctatgtgaagcatgaggcgggcatcgacgatatgttcaac
ttcgagacgtttggcaactccatgctctgcctgttccagatcacgacatcaggcggctgg
gacggactcctggcgcccatcctgaacaacaaggagcccgactgcagctaccggatggaa
caccctggcagctcagtgcgcggcaactgcggcaacccgtcggtgggcatcttcttcttc
gtctcgtacatcatcatctgcttcctgatcgtggtcaacatgtacatcgccgtcatcctg
gagaacttcagtgtggccacggaggagagcgcggagccactgagcgaggatgacttcgag
atgttctatgaggtgtgggagcgctttgacccggacgccacacagttcgtagagtacgac
aagctgcccgaattcgccgacgcacttgaccctccgttgcgcattcccaagccaaacaag
atccagctgatcgccatggatctgcccatggtgagcggcgaccgcatccactgtctggac
atcctcttcgctttcaccctgcgcgtgctcggcgaagagggtgagatggacgcgctgagg
ggtcagatggaggagcgcttcatggcctccaacccttccaaggtgtcctacgagcccatc
accaccacgctacgccgcaagcaggaggagatgtccgccacgatcatccagcgtgccttc
cgacgctaccacctacgccggacagtcaagcgcgcctccaacatgtaccgtcagctgcaa
gacggtggggccgtcatcggccggggcggcgagaaagttcccgacaaggaggtgctggtg
attgtcaagttcaacgagaactcggcctcggacaaaacggacatgaccccctcatcggcc
tcgccgccctcctacaacagcgttgccaagtccgacaaggacaagtacgagaaggacaga
cgggagaaagaagacaaagcgaaagacactcgagacaggaagaagtga
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integrated database retrieval system
