Alosa sapidissima (American shad): 121710035
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Entry
121710035 CDS
T11137
Symbol
taf1
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121710035 (taf1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
asad01001
]
121710035 (taf1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121710035 (taf1)
03036 Chromosome and associated proteins [BR:
asad03036
]
121710035 (taf1)
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
121710035 (taf1)
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
121710035 (taf1)
Protein kinases [BR:
asad01001
]
Serine/threonine kinases: Other
TAF1 family
121710035 (taf1)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121710035 (taf1)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
121710035 (taf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
121710035
NCBI-ProteinID:
XP_041949797
LinkDB
All DBs
Position
5:complement(30279748..30304842)
Genome browser
AA seq
1999 aa
AA seq
DB search
MSDSDSDEEHGRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGSLITEIT
ASEEDEDRDDEKEQAGTDSEGWVKSTEDAVDYSDISEVAEDETRKYRQAMGSLHPGRAND
DEDDYDADCEDIDAKLMPPPPPPSLPTPGKKDELPSQTTSVVGDEGDGIILPSIIAPSSA
VEKVDFSSSSDSESEADRPSQGPGGGGPAILSLPLAGIMQKDAAKALPGVTELFPVFRPG
KVLRFLRLFGPGKNTTSVWRSARRKRKRKQREPQPGTPPPEGEAPECEKKPSWNYEYAPP
PPPEQCLSDDEITMMAPVESKFSQTSGEGDKVTESRPKVAEWRYGPAQLWYDMLGVPEDG
SGFHYGFKLKEEGPEEAQPTPAPAPPPPPPPPPALATTPESQNEELNEEEQERQNLEDEL
FLMVTQLQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLTRSISQL
VPPTPPPMPKAPSISGSKRDKHNQDHQVSHEDDAPWFSIFPIDNEELVYGRWEDNIIWDD
QNMDHMLCPPVLTLDPNDENIILEIPDEKEERTSHSPSKENKKETALKKSRILLGKTGVI
KEEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSIPAVELRQPFFPTHMG
PMKLRMFHRPSLKKYSFGALSQPGPHPSQPLLKHIKKKAKMREQERQASGGGDMFFMRTA
QDLTGKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDSKYGETVYCHTS
PFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYIRELVDMFVVGQECPL
YEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKL
CADFKRTARCQERERGSGREGMDSNWWVVKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAE
QRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVAGVAD
PTGCGEGFSYVKIPNKPTQQKLMSSTQDDRELQPVKKTVTGTDADLRRLSLKNAKQLLRK
FGVPEEEIKKLSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRI
FDLQNKVLESTEVLSTDTDSSSAEDSDFEEMGKNIESMLQNKKTSSQLSREREEQERKEL
QRMLMGEDGDKDKSKGRRKGLSSAVSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDED
GKEYVRCETVRKPAVIDAYTRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQEQLRRLK
RNQEKDKFKGPPEKKAKKVKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAM
TEEQEEELEKTVIHNDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKK
RRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSVLEGIINDIRDLPNTYPFHTPVNAKLVK
DYYKIITRPMDLQTLRENVRKRMYPSREEFRESVELIVKNSSTYNGVKHPLTQVAQSMLD
LCEEKIKEKEDRLVRLEKAINPLLDDDDQVAFSFILDNIVTQKMMNVPDSWPFQHPVNKK
FVPDYYKVIVSPMDLENIRKNISKHKYQNRDVFLSDVSLVHANSVKYNGPDSPYTKTALE
IVNVCKQTLAEYDEHLTQLEKDISTAKEAALDAADLECLDPMTPGPYTPQPAELFDSSTS
LSLQGDASLLAEATLLPTPEKRGVQGRHGRRLGEEESDVDIEGFEEEDDGKPKTPAPAED
GEGDLDDDEEDEDEMLLPPHRRGHEDEYEDEDEGSSRPPQASVLYQDLLMSDGEDDASEE
EGDNPFSSIHLSESGSDSDREPPPASRVHQESARMGMGLDQEESMMSYEGEGPDEETHME
DSNVSYGSYDEMEAQRQRQNSSLGNGEEDGVSEEEEEEDERDGGRRGPSVLTQVQLSEDE
EDSEEFRSVGGDSDMDSDN
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcggacagtgacgaggagcatggtcgcccattctctctcacgggctttctg
tttggcaatatcaacgaggatggacagctggagggtgacagcgtgctcgacacggagtcc
aagaagcacttggcagggttgggatcactgggtctgggctcgctcatcacagagatcact
gccagtgaggaggacgaagaccgcgatgatgagaaagaacaggcaggaaccgactctgaa
ggttgggtgaaaagcacagaagatgcggtggactactctgacatcagtgaagtcgcggag
gatgaaacaaggaaatacagacaagccatgggaagcctacatcctggcagggcaaatgat
gatgaggatgactacgatgcagactgtgaagacattgacgccaagttgatgccccctcct
ccaccaccaagcctacctacaccagggaagaaagatgagcttccaagccaaaccaccagt
gtagttggggatgaaggggacggcatcatcctcccctccatcatcgctccatcctccgct
gtggagaaggtggacttcagcagctcgtcggactctgagtcggaggctgaccggccctcg
cagggccccggagggggcggccctgctattctctcactgcccctggccggcatcatgcag
aaggatgcggccaaggccctgcccggtgtcacagagctcttcccagtgttcagacctgga
aaggtgctgaggttcttgcggctctttggcccaggcaagaacaccacatccgtgtggcgt
agcgcccgcaggaagaggaagaggaagcagcgagagccgcagcccggcacgcccccaccc
gagggcgaggctcctgagtgcgagaagaagcccagctggaactacgagtatgccccaccg
ccacctcccgaacagtgcctgtccgatgacgagatcacaatgatggctccagtggagtcc
aagttctcgcagacgtccggcgagggcgataaggtgaccgagtcgcggccgaaggtggcc
gagtggcggtacggtccggcgcagctctggtacgacatgctgggggtgccggaggatggc
agcggcttccattatggcttcaagctcaaagaggagggaccagaggaggcgcagcccaca
cctgctcctgcacctccacctcctcctccacctccacctgcacttgctaccacacctgag
tcacagaatgaggagctgaatgaggaggagcaggagaggcaaaatttggaagacgagctc
ttcctcatggtcactcagctgcagtgggaggatgacatcatctggaacggggaggatgtg
aagcacaagggcactaagacccagcgagcgagcctggcagggtggctgccctccagcatg
acccgcaatgctaatgcatacaatgcccagcaaggtcttacaaggagcatctctcagttg
gttccgccaaccccacctcccatgcccaaagccccctctatctcagggtccaagagagac
aaacataaccaagaccatcaagtgtcccatgaggatgatgcgccgtggttctccatcttc
cccatcgataatgaggagctggtgtatggacgctgggaggacaacatcatatgggatgac
cagaacatggaccacatgctgtgtccccccgtgctcactctggacccaaacgatgagaac
atcatcctagaaatcccagatgagaaggaggaaaggacatcccactcgccctccaaggag
aacaagaaagagacggccctgaagaagagccgcatcctgctgggaaagaccggcgtcatc
aaggaggagccacagcagaacatgtctcaaccggaggtgaaggatccctggaacctgtcc
aatgatgagttctactaccccaaacagcaggggctcaggggcaccttcggaggcaacatc
atccagcactccatccctgcggtggagctgaggcagccgttcttccccacgcacatgggt
cccatgaagctgcgcatgttccaccgaccctcgctcaagaagtactcgtttggagcgctg
tctcagcccggcccgcacccatcccagccgctgctcaagcacatcaagaagaaggccaag
atgcgggagcaggagagacaggcctcgggtggaggagacatgttcttcatgcgcacggcg
caggacctcacgggcaaggatggagatctcatccttgcagagtacagcgaggagtacccg
cccctcatcatgcaagtcggcatggcaaccaagatcaagaactactacaagagaaaacca
ggtaaggatccaggcgctccagactctaaatatggagagactgtgtactgccacacatca
ccattcctgggttcgctgcaccctggtcagcttctacaggcatttgagaacaatttgttc
cgagctcccatctaccttcataagatgccagagacagacttcctcattatccggacgcgg
cagggctactacatcagagagctggtggacatgtttgtggtgggacaggagtgccctctc
tacgaagtgcccggccccaactccaaacgagcaaacacacacatcagggacttcctgcag
gtgttcatttacagattgttctggaagagtaaggaccgtccacggcgtatccgtatggag
gacatcaagaaggctttcccctcgcactctgagagcagcattcgcaaacgcctcaaactc
tgtgctgacttcaaacgcacagccaggtgtcaggagagagagagaggctcaggcagggaa
gggatggactccaactggtgggtggtgaagcctgacttccggttgcccacggaggaggag
atcagggccatggtgtccccagagcagtgctgcgcctactacagcatgctggtagcagag
cagagactcaaggatgcgggctatggagagaaatccttcttcgcccctgaggaggagaat
gaagaagacttccaaatgaagattgatgatgaagtgcggactgccccctggaacaccaca
cgcgctttcatcgccgccatgaaggggaagtgcctgctggaggtggccggggtggctgac
cccacgggctgtggagagggcttctcctacgtcaaaatccccaacaaacccacccagcag
aagctgatgtcctccacccaggacgaccgcgagcttcagcccgtaaagaagactgtgacc
ggcacagacgccgatctccgacgcctgtccctgaagaacgccaaacagctgctccgcaag
tttggcgttccagaggaagagattaagaagctgtcccgttgggaggtcatcgacgtggtg
aggaccatgtccacggagcaggcgcgctcgggcgaggggcccatgagcaagtttgcccgc
ggctctcgcttctctgtggccgagcaccaggagcgctacaaagaggagtgccagaggatc
ttcgacctgcagaacaaggttctggagtcgacggaggtgttatcgacggacacagacagc
agctcggcggaggacagcgacttcgaggagatgggcaagaacatcgagagcatgctgcag
aacaagaagacgagctcgcagctgagccgcgagcgggaggagcaggagcgcaaggagctg
cagcgcatgctgatgggcgaggacggggacaaggacaagagcaagggacgtcgcaagggc
ctgtccagcgctgtgtccaccggctctcacaaggatgatgacacatcctcagtgaccagc
ctgaactcctcggccactggccggcgtttgaagatctaccgcacattccgcgacgaggac
ggcaaggagtatgtccgctgcgagaccgtgcgcaagcccgccgtcatcgatgcgtacacg
cgtattcgcaccacgaaggacgaggagttcattcgtaagtttgcgctgttcgacgagcag
caccgcgaggagatgcggaaggagaggagacgcatccaggagcagctgagacgcctcaag
cgcaaccaggagaaggacaagttcaagggcccgccggagaagaaggccaagaaggtcaag
gagaggcccgacctcaagctgaagtgtggcgcttgcggtgccattggccacatgaggacc
aataagttctgcccgctctactaccagaccaacgctccgccatccaaccccgtcgccatg
acggaggagcaggaggaggagctggaaaagacggtcatccacaacgacaacgaggagctc
attaaggtggagggcaccaaaatagtcctgggaaaacaactcattgagagcgctgatgag
gtccgcaggaagtctctggtgctgaagttccccaagcagcaacttccacccaagaagaag
aggcgcgtgggaactactgtccactgcgattatctcaatcggccacacaagtccatccat
cggcgccgcaccgaccccatggtcacgctgtcatcagtcctggagggcatcatcaacgac
ataagggatctgcccaacacatacccgttccacactccggtgaatgccaagctggtgaag
gattactacaagatcatcacgcggcccatggacctgcagacgctgcgggagaacgtccgc
aagcgcatgtacccctcacgggaggagttccgagagagcgtggagctcatcgtcaagaac
agctccacctacaacggagtcaagcaccctctcacccaggtggctcagtccatgttggac
ctgtgtgaagagaagattaaagagaaagaggatcgtctggtgcgactggagaaggctatc
aatccactgctggatgatgacgatcaagtggcgttctccttcatcctcgacaacatcgtc
acacagaagatgatgaacgtgcctgactcttggccatttcaacaccctgttaataagaag
tttgttcctgattactataaagttatagtcagccctatggatctggaaaacattcggaag
aacatttccaagcataaataccaaaaccgggacgtcttcctctctgacgtcagcctggtc
cacgcaaacagtgtcaagtacaatggccccgacagcccatacaccaagactgctcttgag
attgtaaatgtctgcaagcagaccctggcagagtatgatgagcatctcacccagttggag
aaggacatctccaccgctaaggaggccgccctggacgctgccgatctggagtgtttggac
cccatgaccccaggaccatacacaccacagcctgctgagttgtttgacagcagtacctct
ctgagtctgcagggtgacgctagcctcttagccgaggctacgcttctccccacgccagag
aaaagaggggtgcagggtcgccacggccgcaggctcggagaggaagagtctgatgtggac
atagaaggctttgaggaagaggatgatggcaagcccaaaacacctgccccagccgaggac
ggagagggcgatctggacgacgacgaggaggacgaggacgagatgctgctgccgccgcac
cgtcgaggccacgaggatgagtacgaggacgaagatgaaggctccagcagaccgccgcag
gccagcgtgctctaccaggacctcctcatgtccgacggagaggacgatgccagcgaggag
gagggagacaaccctttctcctcgatccatctgtcagagagcggcagcgactcggaccgt
gagccgccgcctgcgtccagggtgcaccaggagagcgcgcgcatgggcatgggtctggac
caggaggagagcatgatgtcctacgagggagagggccctgacgaggagacccacatggag
gacagcaacgtcagctatggcagctatgatgagatggaggcgcagcgacagagacagaac
tccagcctgggcaacggagaggaggacggcgttagcgaagaggaggaagaggaggacgag
agagacggcggccggagagggccaagtgtcctcactcaggtccagctcagtgaggacgaa
gaggacagtgaggagttccgctccgtcggaggagacagtgacatggactcagacaactag
DBGET
integrated database retrieval system
