Alosa sapidissima (American shad): 121712926
Help
Entry
121712926 CDS
T11137
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121712926 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121712926 (exosc10)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
121712926 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
121712926
NCBI-ProteinID:
XP_041952977
LinkDB
All DBs
Position
7:28832283..28845354
Genome browser
AA seq
910 aa
AA seq
DB search
MAASTSRGGRDQQSGNSTLNDGSETEGNEFCPGFKDVDSFVKHGLGTVVTATKASAALPQ
AGDEYDFYRSFPGFQEFCATQGDRVLHSMSLLMQHHGCRSHLRDRNKLTGLEDRFDLVVD
ANDLILEKVGILLDEAAGVNRTQEPVMPVGYQPPKIVVSSWNRKGSGSGHSPETFRLLHA
KNVQRPQMRFKDKVDNSNTPFIPKIFVKPNAIVPLPTYFTNKHLHKQRPEDLDVPAALAD
FIHQQRKQEHMEDMFSHPYQHELENLTMPESLACRPEPQMYKPLDETNCQFIDTLDDLVA
LNEKLCNTTVFAVDLEHHSYRSFLGITCLMQISTRDEDFLVDTLELRSEMYILNECFTDP
NIVKVFHGADSDIEWLQKDLGLYVVNLFDTHQASRALNLGRNSLDHLLKVFCNIDTDKRY
QLADWRIRPLPEEMFQYARGDTHYLLYVYDRLRADLLDIGKGLPSVLQAVWNRSREISLK
KYVKPIFTEESYMDMYKKQKKIFNTQQLTAFRLLYAWRDKLAREEDESTGYVLPNHMLMK
IAELLPKEPQGIIACCSPTPPMVRQQINELHQLLKQAREMPLLKSEIVAEKKKVITPIRK
PSQESSLFSPHDTSRISESDLVDRSLQETPIKRGILFSEEEDQDEADAQALAGLVASAKI
KLFEEVTEKVPDKLTVAQQKAHRILESFENPFKMYLPSKNIHINKNAKFDPSSKVYEISN
RWKLRSIEQQQKEAQEKQKTREQAKKAKEERKKAKKSYQESLQNVATVRQQAMETGQPGG
KKRERVDSDMTEETPKPSAKFLKPADTPGDVPSFPAAKAKAKKAAQQNADTEPAAQPESF
TPFDYSKSKLKVFSGGKAKDSGQFDPNKEVHDPNRKKNPKGNKQGAAGGRSMSYMAGKSN
RGFRHNWPKR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctccacgagtagaggtggtagagaccaacaaagtggtaattccacactaaat
gacggctcggagaccgaaggaaacgagttttgtccaggattcaaagatgtcgattcattt
gttaagcatggtttggggactgttgtcacagccacaaaagcctctgcagctctgcctcaa
gctggagatgaatatgatttttacagaagcttcccaggattccaggagttctgcgctact
caaggggacagggttctacatagtatgagtctgctaatgcagcaccatggctgtaggtct
cacttacgagaccgcaacaagctgacaggactagaagatcgatttgatctggtggtggat
gccaatgatttgattctagagaaagtgggtattcttctcgatgaggctgcaggggttaat
agaacccaagagcctgtaatgcctgttggctatcagcctcccaaaatagttgtctccagc
tggaatcgcaaggggagtggctctggtcacagccctgagaccttcagactcctgcatgcc
aaaaatgtccagcgtccacagatgaggttcaaagacaaagtcgacaacagcaacacaccg
ttcatccccaaaatctttgtgaagcccaacgcaatagtacctctgcccacatatttcact
aataaacaccttcacaagcagcggccagaggacctggatgtccctgcggccctggcagac
ttcatccaccagcagagaaaacaggagcatatggaggacatgttctctcatccataccaa
catgaacttgagaatcttaccatgccagaaagtttagcatgtagaccagagcctcagatg
tacaaaccattggatgagactaactgccaatttatagacacattggatgacctggtcgcc
ttgaatgagaagctgtgtaacaccactgtatttgcagtggatttagagcaccattcctac
aggagtttccttggcataacctgcttgatgcaaatttcaacaagggacgaagacttcctt
gtagacaccttggaattgcgcagtgagatgtatatcctcaatgagtgtttcacagatccc
aacattgttaaggtttttcatggggcagactctgacattgagtggctgcagaaagacctt
ggcctctacgttgtcaacctgtttgacacgcatcaggcatcacgtgctctcaaccttggt
aggaactcattggatcatctcctgaaggtgttctgcaacatcgacacagacaagcgctac
cagctggctgactggagaattcggcctttgcccgaagagatgtttcagtatgctaggggg
gatactcactatctcctgtatgtgtacgaccggctgagagcagacctactggacattggc
aagggtctgccctccgtcttgcaagcagtctggaacaggagcagggagatctccttaaag
aaatatgtgaagccgatcttcacagaggagtcctacatggatatgtacaagaagcagaag
aagattttcaacacacagcagctgactgccttcaggcttttgtatgcatggagggataag
ctggcccgggaggaggatgagagcactggctatgtgttgcctaatcacatgttgatgaag
attgcagaattgttgcccaaagagccacagggcattatcgcctgttgcagtcctacccct
cccatggtccgccagcagattaatgaacttcaccagctgttgaagcaagccagagaaatg
ccgcttctcaagagtgaaatagtggctgagaaaaagaaagtgatcacccctataagaaag
ccctcccaggagtcctccctattctctcctcatgacacatcccgcatctccgaaagtgac
ttggttgaccggtctctgcaagagaccccaattaaacgtggaatcctcttctctgaagag
gaagaccaagatgaagctgacgcacaagccttggctggtcttgttgcttcagctaaaatt
aaactgtttgaggaagtgactgaaaaggtgcctgataaacttactgtggcacagcagaaa
gcccacagaatcttggagtcatttgagaaccccttcaaaatgtatttgccatcaaagaat
atccatattaacaaaaatgccaagtttgacccatcatcaaaggtgtatgagattagcaac
agatggaagcttcgtagtattgaacaacaacaaaaagaggcccaggaaaagcagaagacc
agggagcaggcaaaaaaagcaaaagaggaacggaaaaaggccaagaaaagttaccaagaa
tcacttcagaacgttgctactgttcggcaacaggcaatggagactggacaacctggagga
aagaagagggagagagttgacagcgacatgaccgaggaaacccctaaacccagcgcaaag
ttcctcaaacctgcagacacaccaggcgatgtaccttcgtttcctgccgccaaggcgaaa
gccaagaaagcggcacaacaaaatgcagacaccgaacctgctgcccaacccgaatccttc
actccctttgactacagcaagtcaaagctcaaggttttttctggaggtaaagcgaaggat
tcaggacaatttgacccaaataaagaggttcatgatcctaacagaaagaaaaatcctaaa
gggaataaacaaggtgctgctggaggcaggagtatgtcctatatggctggcaaatctaac
cgtggattccgtcacaactggcccaagagatag
DBGET
integrated database retrieval system
