Alosa sapidissima (American shad): 121715904
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Entry
121715904 CDS
T11137
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1 isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03440
Homologous recombination
asad03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121715904 (top3b)
03460 Fanconi anemia pathway
121715904 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121715904 (top3b)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121715904 (top3b)
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121715904 (top3b)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Topoisomerases
121715904 (top3b)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121715904 (top3b)
FA (Fanconi anemia) pathway
121715904 (top3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
121715904
NCBI-ProteinID:
XP_041957876
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Position
8:complement(23168939..23184923)
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AA seq
862 aa
AA seq
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MRTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYTGSFMGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDK
EGENICFEVLDAINPVMNKPYGNDRTVFRAKFSSITDLDICNAMNKLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLVSFGPCQTPTLGFCVERHDKIQSFKPEMY
WVVQAKVFKGKESPLALDWDRGRVFDREVGQMFVNLAKTAREAKVESVSKKEKAKQRPQA
LNTVEMLRVASSALGMGPQHTMQVAERLYTSGYISYPRTETTHYPENFDLKGTLRQQANN
PFWADSVKALLAEGINRPRKGADAGDHPPITPMRSASESELGSDGWRLYDYITRHFIATI
SQDCKYLQTTITFSVGCEGFSCSGKTLISPGFTEVMPWQGIPLEEAMPVCERGDSFTVDE
IKLLEKQTNPPDYLTEAELITLMEKHGIGTDASIPVHINNVCQRNYVTVESGRRLKPTNL
GIVLVHGYYKIDAELVLPTIRSAVEKQLTLIALGKANFQQVLQHTLDIFKRKFHYFVDSI
AGMDELMEVSFSPIAASGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDDTYSLPQMGAIKL
YKELRCPLDDFELVLWTSGSKGKSYPVCPYCFSNPPFRDMKKGMGCNECTHPTCQHSLNS
LGIGQCVECESGVLVFDPTSGPKWRMACNKCNVVVHFFEHAHKVQVAADSCEACEASLVV
VDFNKARSPLPDGETQHTGCVFCDAIFQDLVELKHATMRHPMHRGGGARRGGRGRGRGRR
PGGRGNPKKPKDKMAALAAYFV
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgttttgatggtagcagagaagccgtcgttggcacaatctatagcgaaaatc
ttgtcaaaaggcagctgttcatcacgaaaaggcctgaatggagcatgctccgtccacgag
tacacgggaagcttcatggggcagagtgtgcgattcaagatgacatctgtgtgtggtcat
gtcatgagcctcgacttcatagggaagtacaacaactgggacaaggtagacccagcggag
cttttcagcaaagcccccacagagaagaaggaggccaatccaaaactaaacatggtgaaa
ttcttacaggtggaggccaaaggatgcgattatgtggtgctgtggctggattgtgacaaa
gagggagagaatatctgctttgaggttttggatgccattaacccagtcatgaacaagcca
tatggcaatgaccgcacagtgtttcgtgcaaagttcagctccatcacagacctggacatc
tgcaatgccatgaacaagctgggtgagcccaaccgcaacgaggcgctgtctgtggatgct
cgccaagagctggaccttcgtattggctgtgccttcacacgttttcagaccaaatacttc
caaggcaaatatgggaacctggattcctctctcgtctctttcggaccctgtcagacccct
actctgggtttctgtgtggagaggcatgacaaaatccagtcctttaaacctgaaatgtac
tgggtcgtccaggccaaggtgttcaaaggcaaggagagtcctctggccctggactgggat
cggggacgagtgtttgacagagaggttggccaaatgtttgtcaatctggccaaaacagct
agagaggcaaaggtggagtcagtgagcaagaaggaaaaagccaagcagcggccacaggcc
ctgaacactgtggaaatgctgagagtggccagctcagccttgggaatgggcccacagcac
actatgcaagtggccgagaggctttacacgtcgggatacatcagctacccccgtacagag
accacacactaccccgagaactttgacctgaagggcacactgagacagcaggctaacaac
cccttctgggccgactctgtgaaggcattgcttgcagaggggatcaaccgacccaggaaa
ggagcggatgcaggagaccatccgcccatcacccccatgaggtctgcatcagagagtgaa
ctaggcagtgatggttggcgtctttatgactatatcacacggcacttcattgcaacgatc
agccaagactgcaaataccttcagaccaccatcactttcagcgtcggctgtgaaggcttc
tcctgtagtggaaaaactctcatatcacccggtttcacagaggtcatgccctggcaaggt
atccctctagaggaggccatgcctgtgtgtgagaggggcgactccttcaccgtggacgag
atcaagctgcttgagaagcagaccaatcccccagattacctgactgaagcggagctcatc
acgctcatggagaaacacggcatcggcactgatgccagcatccccgtccacatcaataac
gtctgccagaggaactatgtgacggtggagagtggacgcaggctgaagcctactaacctg
ggcatcgtgcttgtccatggctactacaaaattgatgcagagctggttttgccgacaatt
cgtagtgcggtggagaagcagctaaccctcatcgctctgggcaaagccaatttccaacag
gtgctccaacacaccctagacatcttcaagaggaagttccactactttgttgactcaatt
gcaggtatggatgaattaatggaggtgtccttctcaccgattgctgcttctgggaaaccc
ctctcccgctgtgggaagtgccatcgtttcatgaaatacatccaggccaagccaagccgg
ctacactgctcccactgtgacgacacgtacagcctgccccagatgggagccatcaagctg
tacaaggagctgcgctgcccgctggacgactttgagctagtgctctggacctccggctcg
aaggggaagagctaccctgtctgcccttactgcttcagcaacccccccttcagggacatg
aagaaaggaatgggctgcaacgagtgcacccaccccacctgccagcactctctgaactcg
ctgggcatcggccagtgcgtcgagtgtgagagtggcgtgctggtgttcgaccccacctcg
ggccccaagtggcgcatggcctgcaacaagtgcaacgtggtggtgcacttcttcgagcac
gcgcacaaggtgcaggtggccgccgacagttgcgaggcttgtgaggcctcgctggtggtg
gtcgacttcaacaaggcacgatcgccgctgcccgacggtgagacacagcacacgggctgc
gtattctgcgatgctatctttcaggatctggtggagctcaagcacgccaccatgaggcac
cccatgcaccggggcggaggagcgaggagagggggccggggaaggggtaggggtcgacgc
ccgggcggcagaggaaacccgaaaaaacccaaagacaaaatggctgccctagcagcatac
tttgtgtaa
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