Alosa sapidissima (American shad): 121720373
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Entry
121720373 CDS
T11137
Symbol
lingo4b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4b
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asad04131
]
121720373 (lingo4b)
Membrane trafficking [BR:
asad04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121720373 (lingo4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
LRR_LRWD1
LRRNT
LRR_EndoS
V-set
LRR_Zer-1
LRR_6
LRR_9
Ig_2
Ig_PDGFR_d4
C2-set_2
Methyltransf_3
Motif
Other DBs
NCBI-GeneID:
121720373
NCBI-ProteinID:
XP_041962348
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All DBs
Position
10:29766018..29777371
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AA seq
608 aa
AA seq
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MFGEPVAHLWVWGVLLLLWCASVSAADVVPWPCPQRCDCSPETQEVNCSRKYLTAVPEGF
AADTKRLDLSSNRLKTLSRRQFSGLSKLQELDLSNNVLSMMEVEAFQGLQSLRMLKIRSN
RLKIIPVGVFTGLSNLRSLDLSENEILVFLDYTFRDMASLQQLNAGENDLVFISQRAFVG
LQGLQELNVDRSNLTSVPSEALSQLGGLVKLRLRRLTISALPNNAFRRLHQLRSLKILHW
PSLDTVGSNSLLGLNLTTLAITNCNLSAVPYAAMRHLIYLRYLDLSYNPITTILSNQLGD
LLRLQELHLVGGGLLRIEPAAFRGLPHFRLLNVSSNRLTTLEESAFHSVGNLQILRLDRN
PLACDCRLLWVARRRLRLDFDGRQPVCAAPERARGRRISDFSEGELPVVFTCRQAYIPDR
RPQEVLAEEGTTALFDCKAEGYPLPSITWLSTQQTMLTSMGRIRVLANGSLEVRYAQVQD
SGTYMCLATNAAGNDSIFVKLQVQGFPRNRTAPYYPEGGWSTTPYPPSTNTSAQVTNPYP
FDAKTLVIATTMGFLSFLSSVAICFVFMFFWSQSKGQIKHTATIDFVPRSSMGGGGDGDT
GRFTMKLI
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggagcctgttgcccacctgtgggtgtggggtgtgctgctcctcctgtggtgc
gccagcgtgtcggccgcagacgtcgtcccgtggccctgccctcagcgctgcgactgcagc
ccggagacgcaggaggtgaactgctcccggaagtatctgacggccgtgcccgagggcttt
gcggccgacacaaagcgcctggacctgtcgtccaaccggctgaagacgctgagccgccgg
cagttctccggcctctccaagctccaggagctggacctgagcaacaacgtgctctccatg
atggaggtggaggccttccaggggctgcagagcctccgcatgctcaagatccgtagcaac
cggctcaagatcatccctgtaggcgtcttcacggggctgtccaacctgcgcagcctggac
ctcagcgagaacgagatcctggttttcctggactacaccttccgcgacatggccagcctg
cagcagctgaacgcgggcgagaacgacctggtgttcatctcgcagcgcgccttcgtgggc
ctccagggcctgcaggagctcaacgtggaccgcagcaacttgacgtccgtgcccagcgag
gcgctgtcgcagctgggcgggctggtcaagctgcgcttgcgccggctgaccatcagcgca
ctgcccaacaatgccttccgtaggctgcaccagctgcgcagcctcaagatcctgcactgg
ccctcgctggacactgtgggcagcaacagcctgctgggcctcaacctcaccacactggcc
atcaccaactgcaacctgagcgccgtgccgtatgccgccatgaggcacctgatctacctg
cgctacctggacctctcctacaaccccatcaccaccatcctgagcaaccagctcggggac
ctactgaggctgcaggagctgcacctggtcggcggcggcctgttgcggatcgagccggcg
gcgttccgggggctgccgcacttccggctgctcaacgtgtcatccaaccggctgaccacg
ctggaggagagcgccttccactcggtgggcaacctgcagatcctgcgcctggaccgcaac
ccgctggcgtgcgactgccgcctgctgtgggtggcgcgccggcgcctgcggctggacttc
gacgggcgccagcccgtgtgcgccgcgcccgaacgtgcccgcggccgccgcatcagcgac
ttctccgagggcgagttgccggtggtgttcacctgccgacaggcctacatccccgaccgt
cggccccaggaggtgctggccgaggagggcaccacggcgctgttcgactgcaaggccgag
ggctatccgctgcccagcatcacctggctgtccacgcagcagaccatgctcacgtccatg
ggccgtatccgcgtgctggccaacggttccctggaggtgcgctacgcccaggtgcaggac
agcggcacctacatgtgcctggccaccaacgccgccggcaacgacagcatcttcgtcaag
ctccaggtgcagggcttcccgcgcaaccgcacggcgccctactaccccgagggcggctgg
agcaccacaccgtacccgccctccaccaacacctccgcacaggtgacgaacccgtacccc
ttcgacgccaagacgctggtcatcgccaccaccatgggcttcctgtccttcctgagctcg
gtggccatctgcttcgtgttcatgttcttctggagccagagcaagggccagatcaaacac
acggccaccatcgactttgtgccgcggtcctccatgggcggtggcggggacggggacacg
gggaggttcactatgaagctcatctga
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