Alosa sapidissima (American shad): 121720896
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Entry
121720896 CDS
T11137
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121720896 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121720896 (cnot10)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121720896 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_19
TPR_14
TPR_8
ANAPC3
ARM_TT21_N
ARM_TT21
TPR_7
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
121720896
NCBI-ProteinID:
XP_041963299
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Position
10:4451921..4467163
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AA seq
771 aa
AA seq
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MAESNAEQNTDTKHDNVSSPGISDQEKEMASNAHEAFTAGKYDECLMHLESLQDLNKEDY
KISMNKAIAEFYKSGQTTTGTLKQTLMTLKSQVHTAVEDIDGLDDVENSIMYYNQAIIHY
HMRQYSEAIAIGEKLYQFLEPFEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLEKLTVQG
NSKNGKGEVACRPTCKFYIHRDAVTEAADQIQNRSRELTAGQNASTGKDNATQKAEFTAM
IEAAKSKMHQYKVRAYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAI
KLLNSSNIAEHPGPLKTGECVRCMFWNNLGCIHFAMGKHNLGIFYFKKALQENDHTCAQL
GDGSNGQSKKFTGIPMCALLANKRHELLYNCGIQLLHLGRPLAAFECLMEAVQVYHANPR
LWLRLAECCIAANKGSSEQENKGLPSKKGIVQSIVGQGYHRKIVLASQSTQNTVYSEGQS
AAIPVASMEFAAICLRNALLLLPETQLPEAREQPPSTESSAEGTDAASGKGQDGEKFIPA
APSSPLRKQEVENLRCSILACSAYVALALGDNLMALSHSEKLLYQPKLCGSLKFLGHLYA
AEALISLDRISDAIAHLNPENVTDVSLGVSPSEQDQGTDKGDLEPVESSGKQTPLCYPST
VTSARAMMLFNLGSAYCLRSEYEKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQ
LALQIIKRNQLLPSLKSTSSPDLRKKPPPYQPAAPLQPIQLPSSFTQVQRK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaagcaacgcagagcagaacactgacacaaaacatgacaacgtttcctctcct
ggtatttcagatcaagaaaaagaaatggcttcaaatgctcatgaagcattcacggctgga
aaatatgatgagtgcctgatgcatcttgaaagtcttcaggatctgaacaaggaagactat
aagatctcgatgaataaggccattgcagagttctataaaagtggccaaaccacaactgga
accttaaagcagactttgatgacactgaaaagccaggttcacacagctgtggaagatatt
gatggtttagatgatgtggagaacagcataatgtactacaatcaagctatcatccactac
cacatgaggcagtactctgaagctattgcaattggagaaaaactctaccaatttctggaa
ccctttgagaagtttgctcaggccgtgtgcttcctgttggtggacttgtacctgctcacc
ttccagccggagaaagcccttcacttgctcgccgtgctggagaagctcacagtccagggc
aatagcaagaacggcaaaggagaggtggcatgtcgtcccacatgcaagttctacattcac
agggatgcagtaacagaggcagcagaccagatacagaataggagcagagagcttacggca
ggacagaatgcaagcacaggtaaagacaacgccactcagaaagctgagttcaccgccatg
attgaggcagccaaatcaaagatgcatcagtataaagtgcgagcctacattcaaatgaag
tccctcaaggcctgtaagagggaaatcaagtctgtcatgaacacagcaggcaattctgcc
ccctccctgttcttgaaaagcaactttgaatatctaagaggaaactaccggaaagccatc
aagctccttaattcgtcgaatattgcagagcaccctggtcccctgaaaacaggagagtgt
gtgcgctgcatgttctggaacaacctgggctgcatccactttgctatggggaagcacaat
ctgggcatcttctacttcaagaaagccctgcaggagaacgaccacacctgcgcccagctg
ggcgatggcagcaatggacagagtaagaagttcacaggcatccccatgtgtgccctccta
gctaacaagcgccatgagctgctctacaactgtggcattcagctgctgcacctgggccgg
ccgctggctgcctttgagtgcctgatggaggcggtgcaagtgtaccatgccaacccacgc
ctttggctgcgcctggcagagtgctgcattgctgccaacaaagggagctctgaacaggag
aacaagggcctgcccagcaagaaggggattgtccagtccattgtgggccagggctaccac
cgtaagatagtactggcctcccagtccacacagaacacagtctacagtgagggtcagtca
gcagccatccctgtggccagtatggagtttgcagccatctgtctacgcaacgctctcctg
ctgctgccagagacccagctgcccgaggccagagagcagccgcccagtacagagagcagc
gccgagggcactgatgcagcaagtgggaagggccaagacggagagaagttcatccctgct
gcgccgtcctcgcctctgaggaaacaagaggtggagaacctgaggtgttctatcctagcg
tgcagtgcttatgtggcactggcgttgggggataacctgatggctctcagccactcggag
aagctcctgtatcagcccaagctgtgtggctccctaaagtttttagggcacttgtatgca
gcggaagcgctcatctcgctggaccgcatctcggatgccatcgcccacctcaacccggag
aatgtgacggatgtgtcactaggagtgtcacccagtgagcaggaccagggcactgataaa
ggagacctggagccagtggagtcttcagggaagcagactcctctgtgttaccccagcact
gtaacctcagcacgcgccatgatgctcttcaacctgggcagtgcctactgcctgaggagc
gagtatgagaaggcccgcaagtgcctgcaccaggctgcatccatggtgaacacaaaggag
attcctccagaagccattctcctgggtgtctacttggagctacagaatggcaatacacag
ctagccctccagatcatcaagcgcaatcagctcctgccatcactcaagagcacgtcatcg
ccagacctacgcaagaagccgccaccgtaccagcctgccgcccccttacagcccatccag
ctgccctccagtttcacgcaggtccagcgcaagtga
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