Alosa sapidissima (American shad): 121721297
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Entry
121721297 CDS
T11137
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45 isoform X1
KO
K03678
exosome complex component RRP45
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121721297 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121721297 (exosc9)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121721297 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF3682
Motif
Other DBs
NCBI-GeneID:
121721297
NCBI-ProteinID:
XP_041964049
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All DBs
Position
1:25094477..25098939
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AA seq
398 aa
AA seq
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MKDTPLSNCERTFLLKAIEERKRVDGRETYDYRNIKITFGMDYGFCIVDLGKTKVMSQVS
CELAVPKETRPSEGILFTNVELSPMASPAFESNRQSDLLVKLNRQLERCLRTSKCFDMES
LCVISGEKVWRINVDVHVLNHDGNLMDAVSIAAITSLSQFRRPEVSIQGRDVTVHTAEER
DPVPLSIYHMPISVSFAFFQQGSYLLVDPNDREERVMEGLLVIAMNKHREICSIQSSGGI
MLLKEQVLRCSKIASVKVSEITELIQKALENDKRARKDRGKFGFAESLPKERITALKTQE
APVEMKDIQETASAIISKAEVPLNTSQAVRSPVVHAVGVGQVGEGVTSSWGLEEEEEEEE
EEDKEGEMEERTDKKKWKKGDVVVISDSEEEDVVMLNQ
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatacaccattatcaaattgtgagcggacatttctgctcaaggcgatagaggaa
agaaagcgggtggacggaagagaaacatacgactacagaaatatcaagatcacgtttggc
atggactatggattttgtattgttgatcttggaaaaacaaaggtcatgtcgcaggtatcc
tgtgaactggctgtccccaaagaaactcgtccttcagaagggatcctattcaccaacgtg
gagctgtcaccaatggcctcgcctgcatttgaatctaacaggcagtcagatttgttggtg
aagttgaatagacaattggagcgctgcctacggacctcaaagtgctttgacatggagtca
ttgtgtgtcatctccggagaaaaggtgtggaggatcaatgtggatgttcacgtgttgaac
catgatgggaatctaatggacgcagtaagcatagcagccatcacatctctctcacaattc
agacggccagaggtcagcatccagggacgagacgtcactgtgcatacagctgaagagaga
gaccctgttccactaagcatttatcatatgcctatcagtgtaagctttgccttctttcag
caagggtcttatttactggtggacccaaatgaccgtgaggagagagtgatggagggtctg
ctggtcatcgccatgaacaaacaccgagagatctgctccatccagtccagtggaggcatc
atgttgcttaaggagcaggtcctgcgctgcagcaagatcgccagtgtgaaagtgtctgag
atcacagagctcatccagaaagccctggagaatgacaagagagccaggaaagacagaggc
aagtttggatttgcagagtccttgcctaaagagcgaatcactgcactgaaaacacaggaa
gccccagtggaaatgaaggacatccaggagactgctagtgcaatcatcagtaaggcagag
gtcccactgaacaccagccaagcggtacgttccccagtggtgcatgctgtaggggttggg
caggtgggtgaaggcgtaaccagctcatggggcctggaggaggaggaggaggaggaggaa
gaggaggacaaagaaggagaaatggaagaaaggacagataagaaaaaatggaagaaaggt
gacgttgttgtcatctcagatagtgaagaggaggatgttgttatgttgaaccagtag
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