Alosa sapidissima (American shad): 121724154
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Entry
121724154 CDS
T11137
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121724154 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121724154 (cnot1)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121724154 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121724154 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
121724154
NCBI-ProteinID:
XP_041966453
LinkDB
All DBs
Position
11:complement(13079710..13113157)
Genome browser
AA seq
2410 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVCLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LTKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGFSGVGQEQIDVFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELTKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISTPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFMIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYDQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQNIEISMTGLN
LGPSATSHTPSMPGFPTPLGGSAFSNPQSPAKGFPSLNPNPSATFGIGGLSTQQLPAPLG
IGSTLGMPAVNSDPFGTRKSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRI
YNHPPHPTMSVDEVLEMLQRFKDSSIKREREVFNCMLRNLFEEYRFFPQYPDKELHITAC
LFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHL
ASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGTITTPGSVALAQAQSQAPKAPQAGQ
ASTLVTTATTTTTAAKTTTITRPTAVNFKKDVPPSINTTNIDTLLVATDQTERIVEPPEN
VQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD
TLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILYQD
LELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPLNPWTMAIMNVLAELHQEHD
LKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDTLKNLEEQLSAPKKETKPPEEMLPVGG
TTESLLFAAAPSAPATTTACTATGPPTPQFSYHDINVYALAGLAPHINININIPLLQAHP
QLKQCVRQSIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRN
LTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACCFI
QKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPK
QLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKRPQAENQPCNIEATVPEREQQAWATDD
VAQIYDKCIADLEQHLHAIPPALAMNPQTQALRSLLEGVVLARNSRDGIAALGLLQKAVE
GLLDATSGADPDLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEA
VELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHT
IETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPG
LREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCV
EISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVL
GIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILR
PTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKP
MQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFT
PNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGGATL
GPWKHLQQSDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSA
HMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQA
QQVMEGTGAS
NT seq
7233 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatctactacgctgtctcttctcgcatgtcgatttcagtggcgat
ggtaaaagtagtggcaaagacttccaccagacacagtttttgatccaggagtgtgtgtgt
ctgatcacaaagccaaactttatttcaacactctgttacgccattgacaatcccctgcac
tatcagaagagcttaaaaccatcaccccatttgtttactcagttgagtaaagtcctcaaa
cttacaaaggttcaggaggttatatttggcctcgctctccttaactccagcagctcagac
ctccgaggctttgctgcccagtttgtgaagcagaagcttccagacctccttcgctcatac
gtagacgccgaccttgggggcaaccaggaaggtggcttccaggacatagcaatagaggtt
ctgcacctgcttctttcccatcttctgttcgggcagaagggctttagtggggttggacaa
gagcaaatcgacgtatttctcaaaacactgtgcagagattttccgcaggagcgctgtcct
gtggtgctcgcaccacttctgtaccctgagaaacgggacattctcatggataggatcttg
ccagactctggagagttaaccaagaccatgatggaaagttcgcttgctgagtttatgcag
gaagttggttatggcttctgtgcaagtgtcgatgaatgccgaaacattatcctgcaatat
ggagtgagggaggtcactgcaagtcaggtggccagagtgctgggcatgatggcccgcaca
cactctggtctatctgatgggattcctctacagtccatttccacacctggtagtggcata
tggagcgatgggaaggacaagagcgacggctctcaggctcacacttggaatgttgaagtt
ctgatagatgttgtcaaggaagttaatcctaatttgaacttcaaagaggtgacgtatgag
ctggaccaccctgggtttatgatccgggacagcaagggattacagattgtggtctatggg
attcagaggggacttggcatggaggtcttccctgtggatctcatttatagaccctggaag
catgcagaagggcagttgtcattcatccagcactccttgatgaatcctgatgtgttctgc
tttgctgattatccctgtcacaccgtcgccattgacatcttgaaggctccccctgaagac
gataaccgggagatagctacctggaaaagtctggacctggtggagagtctcctgcgactg
tctgaggtgggccagtatgaccaggtgaagcagctcttcagctttcccatcaagcactgc
ccagacatgctggtgcttgccctgctgcagatcagcacgtcctggcacacgctgcggcat
gagctcatctccaccctcatgcccatcttcctgggaaaccatcccaactctgccatcatc
ctgcactatgcctggcatggacagggccagtccccttctatccgccagctcatcatgcac
tcaatggcagagtggtacatgagaggggagcagtatgaccaagccaagctttcacgcata
ttagatgtggctcaggacttaaagtctctctccatgctgctaaatggtactccatttgcc
tttgtaattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgaccgataaaatccgagagcacggggagcccttcatccaagcctgtgtgacatttcta
aagagacgctgcccctccatcatggggggtctagcacctgacaaggaccagcccaaaagt
gctcagcttcctcctgaaacactggctaccatgttggcgtgtctgcagtcttgtgctggc
agtgtgtcccaggagctttctgaaaccattctgaccatggtggctaactgtagtaatgta
atgaacaaagcacgccagccaccacccggagttatgccaaagggccgcgctccaagcacc
agcagtctagatgccatctctccagtccagaatatagaaatttccatgaccggcctgaat
ctgggcccatcagccacctcccacaccccgagcatgccaggcttccccaccccactgggg
ggctctgctttcagcaacccccagtctccagccaagggctttccttctctcaacccaaac
cccagtgccacttttggaataggtggtctctccacacaacaacttccagctccacttggt
attggctctacacttgggatgccagcagtcaacagtgacccatttggcactaggaagagc
accccgggtctgaacccacccacctttcaacagactgacctatctcaggtttggcctgag
gctaaccagcactttagtaaggaaattgatgatgaggccaacagctacttccagcgcatc
tataaccatcccccacaccccaccatgtctgttgatgaggtgttggagatgctgcagagg
tttaaggactccagtatcaaacgtgagcgtgaagtgttcaactgtatgctgaggaacctg
tttgaggagtatcgcttcttcccacagtacccagacaaagagttgcacatcacagcttgt
ctgtttgggggcatcattgagaagggcctagtcacatacatggctctggggctggcactg
agatatgttcttgaagccttaagaaaaccctttggatccaaaatgtattactttgggatt
gctgcactagataggtttaaaaataggctaaaggattatccacagtattgtcagcacttg
gcatccatagctcattttctccaattcccccatcatttacaagagtgtgtgcagtatatc
gagtatggacagcagtcacgggacccccctgtgaagatgcagggcaccatcaccacacca
ggcagtgtagcgctggctcaggcccagtcccaggcccccaaagcacctcaggctgggcag
gccagcacccttgtcaccactgctaccaccaccaccaccgctgccaaaaccaccaccatc
accaggcccactgctgtcaactttaagaaagatgtgccaccctctataaatacaacaaac
attgacacactgctggtggccactgatcaaacagagaggattgtagagccacctgagaat
gtgcaagagaaaattgccttcatcttcaacaacctctctcaatccaacatgtcccaaaag
gttgaggagctaaaggagaccgtaaaggaggagttcatgccctgggtatctcagtaccta
gtcatgaagagggtcagcattgagccaaatttccacagcttgtattctaacttcctggat
acactgaagaacccagagtttgtgaagatggttctgaatgagacttaccggaacatcaag
gtccttcttacctctgacaaggcagctgctaacttttctgatcgctccctgctgaagaac
ttgggacactggctggggatgattactcttgcaaaaaacaagcccatcttatatcaggat
ctggaattgaaatcactactgcttgaggcctatgtcaaaggccagcaggagctgctgtat
gtggtaccatttgttgccaaagtccttgagtccagcctccgcagcgtggtcttcagaccc
ctgaatccttggacaatggccattatgaatgtactggcagagctgcatcaggaacacgac
ttaaagttgaacctgaagtttgaaattgaggttctgtgtaagaacttgtcactggacatc
aacgacctgaagccggggaacctgctgaaggacaaggacacactgaaaaacctggaggag
cagctgtctgcaccaaagaaggagaccaagccgcccgaagagatgttgcctgtaggaggt
actacagaatctcttctgtttgcagctgctccctcagctccggccactaccacagcctgc
accgctaccggtccccccacgcctcagtttagctaccatgacatcaatgtgtacgcccta
gcagggctggccccgcacataaacatcaacatcaatatccccctgttgcaggcccaccct
cagctgaagcagtgtgtgcggcagtccatcgagcgcgctgtgcaggagctggtgcaccct
gtggtggaccgctccattaagatcgccatgaccacctgcgagcagatcgtcaggaaggac
tttgcactggactcggaggagtcccgcatgcgggtggctgcccatcacatgatgcgcaac
ctgaccgccggcatggctatgatcacctgtagagagccactcctcatgagcatcgccacc
aacctcaagaacagctttgctgcagcacttagggctcccacccctcagcagagagagatg
atggaggaggcggccgctcgcattgcccaggacaactgcgagctggcttgttgcttcatt
cagaagacagccgtggagaaggccggtcccgagatggacaaacggctggccacagagttt
gaattaaggaagcatgcccgccaggagggccggcgctactgcgaccccgtggtgctcacc
taccaggccgagcgcatgcccgagcagatcagactgaaggtgggtggtgtggacccaaag
cagctggctgtttatgaggagtttgcccgaaatgtccctggcttcctcccaagcaatgat
ctgtctcagcccacaggattcctggcccaaccaatgaagcgtccccaggcggaaaaccaa
ccttgcaacattgaggctaccgtcccggaaagagaacagcaggcatgggccactgatgac
gtggctcagatctatgacaagtgcattgcagatctggagcagcacttgcatgccatcccc
ccagccctggccatgaacccacagacccaggctctgcgcagcctgctggagggcgtggtg
ctcgcacgcaactcccgtgacggcatcgccgccctgggcctgctccagaaggctgtggag
ggcttgctggatgccaccagtggtgcagatccagacctgctcctgcgctacagagaatgc
cacctgctggtgctcaaagcactccaggatggacgggcctacggaccacagtggtgcaac
aagcagatcaccagatgcctgattgaatgccgtgacgagtacaaatacaatgtggaggca
gtggagctgctgatcaggaatcacctggtgaacatgcagcagtatgacctgcatctggca
cagtcgatggagaacgggctgcattacatggcagtggcattcgccatgcagctggtcaag
ttgctgctcgtagatgagcgcagcgtgagccacatcacagaggccgacctctttcacacc
atcgagaccctgatgaggaccagcgcccactccagagctaatgccccagaagggctgccc
cagctgatggatgtggtccgctccaactatgaagccatgattgaccgtgctcatggcggt
cccaacttcatgatgcactctgggatctcccaggcatctgagtacgatgaccctccaggc
ctccgagagaaggccgagtacctgctgagggagtgggtcaacctgtaccattctgcagcc
gccggccgggacagtaccaaagccttctctgcttttgtgggccagatgcaccagcagggc
attctcaagacggatgacttgatcacgcgcttcttccgtctctgcactgagatgtgtgtg
gagatcagctaccgggcgcaagcagagcagcagcacaaccctgctgccagcgcagccatc
atcagagccaaatgctaccacaacctggatgcctttgtgcgcctcatcgctcttctggtc
aaacactctggagaggccaccaacacggtcaccaagatcaacctgctcaacaaagtgctc
ggcattgtggtcggtgttctgatccaggaccatgatgtgagacagacggagttccagcag
ctgccttaccaccgcatcttcatcatgctgctgctggagctcaacgcccctgagcacgtc
ctggagaccatcaacttccagaccctcactgccttctgcaatacctttcacatcttgagg
cctacaaaagcccctggctttgtctacgcatggctggagctgatttctcacagaatcttc
attgccagaatgctagcacacaccccacagcagaagggttggcctatgtatgcccagctg
ctcattgatctgttcaagtacttagcccccttcctgaggaatgtcgagctcaacaaacct
atgcaaatcctgtacaagggcactctccgtgtgcttctggtcctgctccatgatttccca
gaattcctgtgtgactaccattatggcttctgtgacgtcatccctcccaactgcatccag
ctgcgaaacctgatcctgagtgccttccctcgcaacatgagacttccagaccccttcacc
cccaatctgaaggtggacatgttgagtgaaattaacattgctccacgcatcctcactaac
tttactggagtgatgccctcccaatttaagaaggatctggactcctacctgaagacgcgc
tctcctgtcaccttcctctctgagctgcgcagcaacctgcaggtagggggcgccactctg
ggtccctggaagcacttacagcaaagcgacacatccttagaccaggtgtccaatgagcct
ggcaatcgctacaatattcagctgatcaatgcgctggtgttgtatgtgggcactcaggcc
atcgctcacattcacaacaagggcagcaccccctctatgagcaccatcacacactctgca
cacatggacatcttccagaaccttgctgtggacctggacactgagggccgctatctgttc
ctgaacgcaatagccaaccagctccgctacccgaacagccacacacattacttcagctgc
accatgctttacttgtttgctgaagctaacacagaggctattcaggagcaaatcaccagg
gtcctgctggagaggctgattgtgaacaggccgcatccatggggattgctcatcaccttc
attgagctcatcaagaacccggcctttaagttctggagccacgactttgtccactgcgct
ccagagatcgagaagttgttccagtcggtggctcagtgctgtatggggcagaagcaggcc
cagcaggtgatggagggcacaggggccagctag
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integrated database retrieval system
