Alistipes senegalensis: NQ519_03690
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Entry
NQ519_03690 CDS
T08441
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
asen
Alistipes senegalensis
Pathway
asen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ519_03690 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asen03021
]
NQ519_03690 (rpoB)
03400 DNA repair and recombination proteins [BR:
asen03400
]
NQ519_03690 (rpoB)
Enzymes [BR:
asen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ519_03690 (rpoB)
Transcription machinery [BR:
asen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ519_03690 (rpoB)
DNA repair and recombination proteins [BR:
asen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ519_03690 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UWN65953
UniProt:
A0ABY5V986
LinkDB
All DBs
Position
complement(953578..957438)
Genome browser
AA seq
1286 aa
AA seq
DB search
MSAAKTQQRISFSTVKNRVPYPDLLEVQLKSFRDFFQMDTTAENRKNEGLYKVFQENFPI
TDTRNNFVLEFIDYYIDPPRYSIEECLERGLTYSVPLKAKLKLYCTDDEHEDFGVVVQDV
YFGTIPYMTERGTFVINGAERVIVSQLHRSPGVFFGQSMHTNGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGYEADQQILEIFDLADEVKVNKANLKKAVGRK
LAARVLSTWVEDFVDEDTGEVVSIERNNVIVDRETVLEESHIDEIIESGAKTILLHKENL
SGIDFSIIYNTLQKDPCNSEKEAVVYIYRQLRASEPPDEATARDVIEKLFFSDKRYDLGD
VGRYRINKKLDLDIDPAIRTLTREDIIAIIKYLIQLINSKADVDDIDHLSNRRVRTVGEQ
LSNQFSVGFVRMARTIRERMNVRDNEVFTPVDLINAKTLSSVINSFFGTSQLSQFMDQIN
PLAEITHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYA
KISPMGFIETPYRRVENGKVDMDNSHIRYYSAEEEEDLVAAQANTPIDEEGNFLEPDRIK
AREGADFPVVTASEVDLMDVAPNQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLVTS
EAPIVGTGIEKDMITDSRIQIVAEGDGEVTFADATKIQIKYERTEDEILASFAPEITTYE
LPRYRRTNQNTSVTLKPAVLTGDKVVKGQILTEGYSTQHGELALGRNLKVAFMPWKGYNF
EDAIVISERIQREDIFTSVHVDEYIMEVRDTKRGVEELTSDIPNVSEDATKDLDANGIVR
IGANIHPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKAQPSLHGVVIDTK
LYSRANKEGKKGKSAEKAQLDKLDEKFAAEIADLTKLLVSKLWTLLQGKTTTGVTDYFGV
ELYPAGTKFSQKMLEEIARKSTDEKTGVVMGYLNLGSCNWTGDAHTDALIEATVNNYTIE
WKKADAAIKREKYNITNGDELPQTGVIQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIV
RDEDMPFLEDGTIVDICLNPLGVPSRMNLGQIYETVLGWAGRELGLKFATPIFDGASLDQ
INEYTAQAGIPHSGRTYLYDGGTGEMFDQPATVGVIYMLKLGHMIDDKMHARSIGPYSLI
TQQPLGGKAQFGGQRFGEMEVWALEGFGAANILQEILTIKSDDVMGRAKAYEAIVKGENL
PKPGIPEAMNVLLHELRGLALSVKLE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagcaaaaacacaacagagaattagcttttcgacagtcaagaaccgggttccc
tatccggatctgctggaggtacagcttaaatcattccgggactttttccagatggacact
acggctgaaaaccgtaagaacgagggcctgtacaaggtctttcaggaaaatttccccatc
acggacacccggaacaacttcgttctggagttcatcgactactatatcgacccgccccgc
tactcgatcgaggagtgtctggagcgcggtttgacgtacagcgtcccgctgaaagcaaag
ctgaaactttactgcacggacgacgaacacgaggatttcggcgtggtcgtccaggacgtt
tacttcggtacgattccctatatgaccgaacgcggtacgttcgtcatcaacggtgcggag
cgcgtcatcgtatcccagctgcaccgttcgccgggcgtgttcttcggacagagcatgcac
accaacggcaccaagctctactcggcgcgaatcattccgttcaagggttcgtggatcgag
ttcgcaacggacatcaacaacgtgatgtacgcctacatcgaccgtaagaagaagctgccc
gtcaccacgctgctgcgtgccatcggttacgaggcggaccaacagattctcgagattttc
gacctggcggacgaggtgaaggtcaacaaggccaacctcaaaaaggccgtgggccgcaaa
ctggccgcgagggtgctctcgacgtgggtcgaggacttcgtggacgaggatacgggcgag
gtggtctccatcgagcgaaacaacgtcatcgtggaccgcgaaacggtcctcgaagagagc
catatcgacgaaattatcgagagcggcgccaagacgatcctcctgcacaaggagaatctt
tcgggcatcgacttctcgatcatatacaacaccctgcaaaaggacccctgcaactccgaa
aaggaggctgtggtctacatttacagacagttgcgcgcttcggagccgcccgatgaggct
acggcgcgcgacgttatcgagaaacttttcttctcggacaaacgctacgacctgggcgac
gtgggccgctaccgtatcaacaagaagctggacttggacatcgacccggctatccgtacg
ctgacgcgcgaggacatcatcgccatcatcaaatacctgatccagctgatcaattcgaag
gccgatgtcgatgatatcgaccacctgtcgaaccgccgtgtccgcacggtgggcgagcag
ctgtcgaatcagttctcggtcggtttcgtgcgcatggcgcgtacgatccgcgagcgcatg
aacgtgcgcgacaacgaagtgtttacgccggtggacctgatcaacgccaagaccctctcg
tcggtgatcaactccttcttcggcacttcgcagctttcgcagttcatggaccagatcaac
ccgctggccgagatcacgcacaagcgccgtctgtcggccctcggtcccggcggtctgtcg
cgcgaccgtgccggtttcgaggtgcgcgacgtgcactatacgcactacggacgcctctgc
ccgatcgagtcgccggaaggcccgaacatcggtctgatttcgtcgctgtgcgtctatgcg
aagatctccccgatgggattcatcgagacgccgtaccgccgtgtcgagaacggcaaggtt
gatatggacaattcgcatatccgctactactcggccgaagaggaggaggacttggtggcc
gcacaggccaacaccccgatcgacgaggagggcaatttcctggagcccgaccgcatcaag
gcgcgtgagggcgccgatttccccgtggttacggccagcgaagtggacctgatggacgtg
gctccgaaccagatcgcctcgatcgccgcgagcctcatcccgttcctcgagcacgacgac
gccaaccgtgcgctgatgggttcgaacatgatgcgccaggccgtgcccctggtgacttcg
gaggccccgatcgtcggcacgggtatcgagaaggacatgatcaccgacagccgcatccag
atcgtcgccgagggcgacggcgaggtgactttcgccgatgcgacgaagattcagatcaaa
tacgagcgcacggaggacgagattctcgcgtcgttcgctccagaaatcacgacttacgag
ctgccgcgctaccgccggacgaaccagaacacttcggtgacgctgaaacccgcggtgctg
accggcgacaaggtcgtgaaggggcagattctgaccgagggttattcgacgcagcacggc
gaactggctctgggccgcaacctgaaggtggcgttcatgccctggaagggttacaacttc
gaggatgccatcgtgatttcggagcgtatccagcgcgaggacatcttcacctcggtgcat
gtcgatgaatatatcatggaggtccgcgacaccaaacgcggtgtcgaggagctcacgtcg
gatattcccaacgtttcggaggacgccacgaaggacctcgacgccaacggtatcgtccgc
atcggcgccaacatccacccgggcgacatcctgatcggtaagatcaccccgaagggcgag
agcgatccttcgcccgaggagaagttgctccgtgcgatcttcggcgacaaggccggcgat
gtgaaggacgcttcgctgaaagcccagccgtcgctgcacggcgtggtgatcgacaccaaa
ctttacagccgcgccaacaaggagggcaagaagggcaagagcgccgagaaagcgcagctc
gacaagctcgacgagaagttcgcagccgagatcgcggatctcacgaagcttctggtttcg
aagctgtggaccctgcttcagggcaagaccacgacgggcgttaccgactatttcggggtg
gagctctaccccgcgggcacgaagttctcgcagaagatgctggaggagatcgcccgcaaa
tcgacggacgaaaagaccggcgtggtgatgggttatctcaacctcggctcgtgcaactgg
acgggcgacgcgcacaccgatgcgctgatcgaggccaccgtcaacaactacaccatcgag
tggaagaaggccgacgccgccatcaagcgtgagaaatacaacatcaccaacggcgacgaa
ctcccgcagacgggcgtcatccagatggccaaagtctacatcgccaagaagcgtaagctg
aaagtgggcgacaagatggccggacgccacggcaacaagggcatcgtggcccgtatcgtg
cgcgacgaggacatgccgttcctcgaagacggaaccatcgtcgatatttgcctgaacccg
ctgggcgtgccttctcgaatgaacctcgggcagatttacgagaccgtgctcggatgggcc
ggccgcgagctggggttgaaattcgcaacgccgatcttcgacggcgcttcgctcgaccag
atcaacgaatacacggcgcaggcgggcattccgcacagcggccgcacctacctctacgac
ggcggtacgggcgagatgttcgaccagccggccacggtgggcgtgatctacatgctcaag
ctgggccacatgatcgacgacaagatgcacgcgcgttcgatcggtccctactcgctcatc
acccagcagccgcttggcggtaaggcgcagttcggcggtcagcgtttcggtgagatggag
gtctgggcgctcgaaggcttcggcgccgccaatatcttgcaggagatcctgacgatcaag
tccgacgacgtgatgggccgtgccaaggcgtacgaggccatcgtcaagggcgagaacctg
cccaaaccgggcatccccgaggcaatgaacgtgctgctgcacgagttgcgcggtctggcc
ctgtcggtgaagctcgagtaa
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integrated database retrieval system
