Actinocatenispora sera: Asera_20980
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Entry
Asera_20980 CDS
T07446
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aser
Actinocatenispora sera
Pathway
aser03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aser00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Asera_20980 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aser03021
]
Asera_20980 (rpoB)
03400 DNA repair and recombination proteins [BR:
aser03400
]
Asera_20980 (rpoB)
Enzymes [BR:
aser01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Asera_20980 (rpoB)
Transcription machinery [BR:
aser03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Asera_20980 (rpoB)
DNA repair and recombination proteins [BR:
aser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Asera_20980 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BCJ27990
UniProt:
A0A810KXM9
LinkDB
All DBs
Position
2170323..2173661
Genome browser
AA seq
1112 aa
AA seq
DB search
MPNLLAIQTESFDWLVGNEAWRARSADDSAARSGLAEILEEISPIEDFSGTMSLSFSNPR
FDEVKASIEECKEKDLTYCAPLFVTAEFINHTTGEIKSQTVFMGDFPMMTSKGTFIVNGT
ERVVVSQLVRSPGVYFDKQPDKTSDRDVSSVKVIPSRGAWLEFDIDKRDTAGVRIDRKRR
QAVTVLLKAIGWSNEQIRERFSWSEIMLATLEKDHIGSQDEALLDIYRKLRPGEPPTREN
AQTLLDNLFFNPKRYDLAKVGRYKVDKKLELDTPITTGVLTEDDIVSTIEYLCRLHTGED
GYDPDDIDHFGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV
VAAIKEFFGTSQLSQFMDQANPLTGLTHRRRLSALGPGGLSRDRAGMEVRDVHPSHYGRM
CPIETPEGPNIGLIGALAAFARVNAFGFIETPYRKVIEGKVTDEVQYLTADEEDRYVIAQ
ANAQLTEDGSFVEDTVLVRRKGGEFEAVAPGAVDYIDVSPRQMVSVATAMIPFLEHDDAN
RALMGANMQRQAVPLIKAESPFVGTGMEYRAAVDAGDVVVAEEPGVVEDLCADYVTVHQD
DGHRRTYLLHKFRRSNAGTCINQSPVVDEGQRVEAGQVIADGPCTDEGEMALGKNLLVAF
MPWEGYNYEDAIILSQRIVQEDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLAD
LDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE
SGTVIGVRTFSREDGDELSPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVISKILPLED
MPFLEDGTPVDIVLNPLGVPSRMNVGQVLETHLGWLAKNGWKLKVDDTPWKQSLASIDAD
SSEPDTNLATPVFDGAHEEEIAGMLEASLPNRDGTQLIGRTGKAKLFDGRSGEPFPSPIA
VGYMYIIKLNHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYA
LQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGST
LEMKDSDDEVFRAAEELGIDLSRHEPSSVEEV
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaacctccttgccatccagaccgagtcgttcgactggctggtgggcaacgaggcc
tggcgcgctcgcagtgccgatgactccgccgctcggagtggactcgcggagatcctggag
gagatcagtcccatcgaggacttctccggcactatgtcgctttccttctcgaaccctcgg
ttcgacgaggtgaaggcgtcgatcgaagaatgtaaggagaaggacctcacctactgcgcg
ccgctgttcgtcaccgcggagttcatcaaccacacgactggcgagatcaagagccagacc
gtgttcatgggtgacttcccgatgatgacgagcaagggcacgttcatcgtcaatggcacc
gagcgtgtcgtcgtgtcccagttggtccgctcgccgggtgtctacttcgacaagcagccc
gacaagacgtccgaccgcgatgtctccagcgtgaaggtcatcccgagccggggtgcctgg
ctggagttcgacatcgacaagcgcgacaccgccggtgtgcgcatcgaccgcaagcgtcgt
caggccgtcaccgtcctgctcaaggccatcggttggtcgaacgagcagatccgggaacgg
ttcagctggtccgagatcatgctggccaccctggagaaggaccacatcggcagccaggac
gaggcgctgctggacatctaccgcaagctgcggccgggtgagccgccgacgcgggagaac
gcgcagacgctgctcgacaacctcttcttcaacccgaagcggtacgacctggccaaggtc
ggtcgctacaaggtggacaagaagctggaactcgacacgcccatcaccaccggggtgctg
accgaggacgacatcgtctccacgatcgaatacctgtgccgtctgcacaccggcgaggac
gggtacgacccggacgacatcgaccacttcggcaaccgtcggctgcgcaccgtcggcgag
ctcatccagaaccaggtccgtgtcggcctgtcccggatggagcgcgtcgtgcgggagcgc
atgaccacgcaggacgtcgaggcgatcacgccgcagaccctgatcaacatccggccggtg
gtggccgcgatcaaggagttcttcggcaccagccagctctcccagttcatggaccaggcc
aacccgctcacgggtctgacccaccgccggcggctgtcggcgctgggcccgggcggtctg
tcccgggaccgggcgggcatggaggtccgtgacgtccacccgtcccactacggccggatg
tgcccgatcgagacgccggaaggcccgaacatcggcctgatcggcgcgctggccgcgttc
gcgcgggtcaacgcgttcggcttcatcgagacgccgtaccggaaggtgatcgagggcaag
gtcaccgacgaggtgcagtacctgaccgccgacgaggaggacaggtacgtcatcgcgcag
gccaacgcgcagctgaccgaggacgggtcgttcgtcgaggacaccgtgctggtccgtcgt
aagggcggcgagttcgaggccgtcgcgccgggagccgtcgactacatcgacgtctcgccg
cggcagatggtctccgtcgccaccgcgatgatcccgttcctggagcacgacgacgcgaac
cgcgccctgatgggtgcgaacatgcagcgtcaggcggtgccgctgatcaaggcggagtcg
ccgttcgtcggtaccggaatggaataccgcgccgcggtcgacgccggtgacgtcgtcgtc
gccgaggagcccggtgtcgtcgaggacctgtgtgccgactacgtgacggtgcaccaggac
gacggccaccgccgcacctacctgctgcacaagttccgccgctccaacgccggtacctgc
atcaaccagagcccggtcgtggacgagggacagcgggtcgaggcgggccaggtgatcgcc
gacgggccgtgcaccgacgaaggtgagatggcgctcggcaagaacctgctggtcgcgttc
atgccgtgggagggctacaactacgaggacgcgatcatcctctcgcagcgcatcgtgcag
gaggacgtgctctcctcgatccacatcgaggagcacgaggtcgacgcccgcgacaccaag
ctgggtccggaggagatcacccgggacatcccgaacgtctccgaggagatgctggccgac
ctcgacgagcggggcatcatccgcatcggcgccgaggtccgggacggcgacatcctggtc
ggcaaggtcaccccgaagggcgagaccgagctgaccccggaggagcggctgctgcgcgcg
atcttcggtgagaaggcccgggaggtccgggacacctcgctgaaggtgccgcacggcgag
tccggcacggtgatcggtgtccgcacgttcagccgggaggacggcgacgagctgtccccg
ggcgtgaacgagctggtccgggtgtacgtcgcccagaagcgcaagatccaggacggcgac
aagctcgccggacgccacggcaacaagggcgtcatctccaagatcctgccgctggaggac
atgccgttcctggaggacggcaccccggtcgacatcgtgctgaacccgctcggcgtgccg
agccggatgaacgtcggacaggtgctggagacccacctcggctggctggccaagaacggc
tggaagctgaaggtcgacgacaccccgtggaagcagtcgctcgcctcgatcgacgccgac
tcgtccgagccggacacgaacctggccacgccggtgttcgacggcgcgcacgaggaggag
atcgccggcatgctggaggcgtcgctcccgaaccgggacggcacccagctgatcgggcgt
accggcaaggcgaagctgttcgacggtcgctccggcgagccgttcccgtcgccgatcgcg
gtcggctacatgtacatcatcaagctgaaccacctggtggacgacaagatccacgcccgc
tccaccggcccgtactcgatgatcacccagcagccgctgggtggtaaggcgcagttcggt
ggccagcggttcggcgagatggagtgctgggccatgcaggcctacggcgcggcctacgcg
ctgcaggaactgctgacgatcaagtccgacgacgtggtcggccgcgtcaaggtgtacgag
gcgatcgtcaagggcgagaacatccccgaaccgggcatcccggagtcgttcaaggtcctg
ctcaaggagctgcagtcgctgtgcctcaacgtcgaggtgctctccagcgacggcagcacc
ctggagatgaaggacagcgacgacgaggtgttccgcgccgcggaggaactcggtatcgac
ctgtcccggcacgagccgagcagcgtcgaagaggtctga
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